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Update docs engine deps #854

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@matejmatuska matejmatuska commented Mar 14, 2024

The the previously used version of the docs engine (sphinx) was very old and long unmaintained.

Going with version 7.2.6 since it's available on Ubuntu 22.04 (which ReadTheDocs builds the docs on) and also on Fedora 37.

The biggest changes is the replacement of recommonmark with MyST for markdown
parsing. The recommonmark library is no longer maintained and is also deprecated
in sphinx. The recommended replacement is MyST library. In our case it seems
like a drop-in replacement with only errors being "non-consecutive header level
increment", which shouldn't be a problem and the docs build successfully.
No major changes, just some deprecated APIs are replaced.
Instead of linking to autodoc generated HTML files (in the pydoc dir), use cross
references. Also fix some of the ambiguous references and repair some of
the broken ones.
No breaking changes.
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