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Release 0.10.2 (#4014)
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* REL 0.10.2

* add GLM update to highlights

* update changelog

* fix typo
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Remi-Gau committed Sep 29, 2023
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9 changes: 6 additions & 3 deletions doc/changes/latest.rst → doc/changes/0.10.2.rst
Expand Up @@ -18,13 +18,16 @@ HIGHLIGHTS

- :bdg-success:`API` Add ``vmin`` and ``symmetric_cbar`` arguments to :func:`~nilearn.plotting.plot_img_on_surf` (:gh:`3873` by `Michelle Wang`_).

- :bdg-success:`API` Improve ``contrasts`` allowing fixed effects on F contrasts (:gh:`3203` by `Bertrand Thirion`_)

- :bdg-success:`API` New experimental surface API to facilitate working with surface data in downstream surface-based analyses. We provide this API as a nilearn.experimental.surface module as it is still incomplete and subject to change without a deprecation cycle. (:gh:`3856` by `Jerome Dockes`_).

NEW
---

- :bdg-info:`Plotting` Volume plotting functions like :func:`~plotting.plot_img` now have an optional ``radiological`` parameter, defaulting to ``False``. If ``True``, this will invert the x-axis and ``L`` and ``R`` annotations to confirm to radiological conventional view. (:gh:`3172` by `Konrad Wagstyl`_ and `Yasmin Mzayek`_).

- New experimental surface API to facilitate working with surface data in downstream surface-based analyses. We provide this API as a nilearn.experimental.surface module as it is still incomplete and subject to change without a deprecation cycle. (:gh:`3856` by `Jerome Dockes`_).
- :bdg-success:`API` New experimental surface API to facilitate working with surface data in downstream surface-based analyses. We provide this API as a nilearn.experimental.surface module as it is still incomplete and subject to change without a deprecation cycle. (:gh:`3856` by `Jerome Dockes`_).

Fixes
-----
Expand Down Expand Up @@ -80,15 +83,15 @@ Enhancements

- :bdg-success:`API` Improve ``generate_report`` method of maskers by allowing users to pass a cmap argument for plotting image (:gh:`3897` by `Yasmin Mzayek`_)

- Improve ``contrasts`` allowing fixed effects on F contrasts (:gh:`3203` by `Bertrand Thirion`_)
- :bdg-success:`API` Improve ``contrasts`` allowing fixed effects on F contrasts (:gh:`3203` by `Bertrand Thirion`_)

Changes
-------

- :bdg-dark:`Code` Validate the content of events files before plotting them (:gh:`3994` by `Rémi Gau`_).
- :bdg-dark:`Code` ``nilearn.glm.first_level.experimental_paradigm.check_events`` will now throw a warning if some events have a 0 second duration and will throw an error if an event has ``NaN`` onset or duration (:gh:`3943` by `Rémi Gau`_).
- :bdg-secondary:`Maint` Removed old files and test code from deprecated datasets COBRE and NYU resting state (:gh:`3743` by `Michelle Wang`_).
- :bdg-secondary:`Maint` PEP8 and isort compliance extended to the whole nilearn codebase. (:gh:`3538`, :gh:`3566`, :gh:`3548`, :gh:`3556`, :gh:`3601`, :gh:`3609`, :gh:`3646`, :gh:`3650`, :gh:`3647`, :gh:`3640`, :gh:`3615`, :gh:`3614`, :gh:`3648`, :gh:`#3651` by `Rémi Gau`_).
- :bdg-secondary:`Maint` PEP8 and isort compliance extended to the whole nilearn codebase. (:gh:`3538`, :gh:`3566`, :gh:`3548`, :gh:`3556`, :gh:`3601`, :gh:`3609`, :gh:`3646`, :gh:`3650`, :gh:`3647`, :gh:`3640`, :gh:`3615`, :gh:`3614`, :gh:`3648`, :gh:`3651` by `Rémi Gau`_).
- :bdg-secondary:`Maint` Finish applying black formatting to most of the codebase. (:gh:`3836`, :gh:`3833`, :gh:`3827`, :gh:`3810`, :gh:`3803`, :gh:`3802`, :gh:`3795`, :gh:`3790`, :gh:`3783`, :gh:`3777` by `Rémi Gau`_).
- :bdg-danger:`Deprecation` Empty region signals resulting from applying ``mask_img`` in :class:`~maskers.NiftiLabelsMasker` will no longer be kept in release 0.15. Meanwhile, use ``keep_masked_labels`` parameter when initializing the :class:`~maskers.NiftiLabelsMasker` object to enable/disable this behavior. (:gh:`3722` by `Mohammad Torabi`_).
- :bdg-danger:`Deprecation` Empty region signals resulting from applying ``mask_img`` in :class:`~maskers.NiftiMapsMasker` will no longer be kept in release 0.15. Meanwhile, use ``keep_masked_maps`` parameter when initializing the :class:`~maskers.NiftiMapsMasker` object to enable/disable this behavior. (:gh:`3732` by `Mohammad Torabi`_).
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4 changes: 2 additions & 2 deletions doc/changes/whats_new.rst
Expand Up @@ -5,8 +5,8 @@
What's new
==========

.. _latest:
.. include:: latest.rst
.. _v0.10.2:
.. include:: 0.10.2.rst
.. _v0.10.1:
.. include:: 0.10.1.rst
.. _v0.10.0:
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2 changes: 1 addition & 1 deletion doc/maintenance.rst
Expand Up @@ -209,7 +209,7 @@ Add these changes and submit a PR:

.. code:: bash
git add doc/whats_new.rst
git add doc/changes/
git commit -m "REL x.y.z"
git push origin REL-x.y.z
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