System test #61
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: System test | |
| # Build and test using conda environment | |
| # | |
| # only "lightweight test in CI" | |
| # for example examples/example_03_brain_coregistration.py leas to an | |
| # out of memory error causing the workflow to be killed early | |
| on: | |
| push: | |
| branches: ["*"] | |
| schedule: | |
| # Uses the cron schedule for github actions: | |
| # runs at midnight on the 1rst and 15th of every month | |
| # | |
| # https://docs.github.com/en/free-pro-team@latest/actions/reference/events-that-trigger-workflows#scheduled-events | |
| # | |
| # ┌───────────── minute (0 - 59) | |
| # │ ┌───────────── hour (0 - 23) | |
| # │ │ ┌───────────── day of the month (1 - 31) | |
| # │ │ │ ┌───────────── month (1 - 12 or JAN-DEC) | |
| # │ │ │ │ ┌───────────── day of the week (0 - 6 or SUN-SAT) | |
| # │ │ │ │ │ | |
| # │ │ │ │ │ | |
| # │ │ │ │ │ | |
| # * * * * * | |
| - cron: "0 0 1,15 * *" | |
| jobs: | |
| system-test: | |
| strategy: | |
| matrix: | |
| os: ["ubuntu-latest"] | |
| python-version: ["3.8", "3.9", "3.10"] | |
| cmd: | |
| [ | |
| "python3 examples/testing_01*.py", | |
| "python3 examples/testing_03*.py", | |
| ] | |
| runs-on: ${{ matrix.os }} | |
| # Make sure conda env is activated for every "run" | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Shallow clone of nighres repo | |
| uses: actions/checkout@v3 | |
| with: | |
| submodules: "recursive" | |
| fetch-depth: 0 | |
| - name: Set up Python ${{ matrix.python-version }} env with conda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| activate-environment: nighres | |
| environment-file: conda-nighres.yml | |
| python-version: ${{ matrix.python-version }} | |
| auto-activate-base: false | |
| - name: Build java dependencies | |
| run: | | |
| ./build.sh | |
| - name: Install nighres | |
| run: | | |
| pip install . | |
| - name: Conda environment info | |
| run: | | |
| conda info | |
| conda list | |
| - name: Run ${{ matrix.cmd }} | |
| run: | | |
| ${{ matrix.cmd }} |