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22 Open 1 Closed
22 Open 1 Closed
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Issues list

glob_wildcards foo
#38 opened Apr 19, 2024 by ctb
what's the difference between --cores and -j?
#37 opened Dec 26, 2023 by ctb
include "dynamic" modification of Snakefile in advanced section
#36 opened Dec 24, 2023 by ctb
using custom resources to limit simultaneous jobs
#35 opened Aug 21, 2023 by ctb
check out hydra-genetics!
#34 opened Jul 15, 2023 by ctb
cluster computing info
#33 opened Jul 9, 2023 by ctb
could snakemake flag "Killed" subprocesses (generally -9, or OOM) in some special way?
#32 opened Jul 9, 2023 by ctb
revisit wildcards example for mixed things
#31 opened Jul 9, 2023 by ctb
note on input/output and shell commands
#30 opened Jul 9, 2023 by ctb
1
thoughts on checkpoints
#29 opened Jul 9, 2023 by ctb
1
draft/outline: Loading/finding software
#28 opened Jul 3, 2023 by ctb
idea for motivational blurb
#27 opened Apr 19, 2023 by ctb
talk about how to run snakemake
#25 opened Apr 11, 2023 by ctb
2
automate deploy of updated main branch to gh-pages
#24 opened Apr 11, 2023 by ctb
include version info for snakemake and sourmash among others
#23 opened Apr 11, 2023 by ctb
try automating figure generation for included figures
#22 opened Apr 11, 2023 by ctb
add note that wildcard values are printed out when executing snakemake rules
#20 opened Apr 9, 2023 by ctb
should we use / default to using rules.<rulename> in snakefiles?
#19 opened Apr 8, 2023 by ctb
1
remove metadata from snakefile examples & code before including in book
#11 opened Mar 28, 2023 by ctb
consider adding syntax highlighting for snakemake specifically
#6 opened Jan 29, 2023 by ctb
add automatic deployment to gh-pages
#4 opened Jan 26, 2023 by ctb
1
Add citation information
#1 opened Jan 21, 2023 by ctb
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