Releases: nf-core/rnasplice
Releases · nf-core/rnasplice
nf-core/rnasplice 1.0.4
What's Changed
Full Changelog: 1.0.3...1.0.4
Contributors
jma1991
Assets 2
nf-core/rnasplice 1.0.3
nf-core/rnasplice 1.0.2
What's Changed
- Specify pScreenAdjusted argument depending on analysis method by @jma1991 in #113
- Add missing example contrastsheet by @jma1991 in #114
- Important! Template update for nf-core/tools v2.11.1 by @nf-core-bot in #110
- Patch fix v1.0.2 by @jma1991 in #115
- Release of patch fix v1.0.2 by @jma1991 in #116
Full Changelog: 1.0.1...1.0.2
Contributors
jma1991 and nf-core-bot
Assets 2
nf-core/rnasplice 1.0.1
What's Changed
- add zenodo doi by @maxulysse in #96
- bump version by @jma1991 in #95
- cast command args to numeric by @jma1991 in #100
- Revert "cast command args to numeric" by @jma1991 in #101
- patch run drimseq filter by @jma1991 in #102
- Patch v1.0.1 by @jma1991 in #103
New Contributors
- @maxulysse made their first contribution in #96
Full Changelog: 1.0.0...1.0.1
Contributors
maxulysse and jma1991
Assets 2
nf-core/rnasplice 1.0.0
What's Changed
- Sl 29 implement featurecount module in #1
- Sl 35 rmats single condition by @bensouthgate in #2
- SL-33 implement edge deu module in #3
- SL-77 Add .github files in #4
- SL-78 update nf-core module structure imports in #5
- SL-70 Add strandedness,condition and validation code in #6
- SL-82 add groovy functions and include valid_params in #7
- SL-84 parametize gff type / add process_single tag in #8
- SL-86 refactor ch_samplesheet in #9
- SL-93 refactor rmarts input checks in #10
- SL-95 format bin python files in #11
- Sl 96 refactor aligner conditional behaviour in #12
- Sl 102 add condition check for rmats to groovy script in #13
- SL-101 add suppa parameter check in #14
- SL-107 typo correction in dex seq by @asmaali98 in #17
- SL-98 add rmats mulled container, resolve dexseq bug by @asmaali98 in #15
- SL-105 add getchromsizes to modules conf in #18
- SL-108 add single prep to withname pattern in #19
- Sl 64 write GitHub documentation by @bensouthgate in #20
- SL-106 check denominator specified correctly in #21
- SL-112 add warning for user in #22
- SL-104 fix withname pattern in #23
- SL-98 rmats read length correction by @asmaali98 in #24
- SL-118 respec modules conf in #25
- SL-119 add gtf_gene_filter to modules.config in #26
- SL-117 fix featurecounts spec in #27
- Sl 64 write GitHub documentation by @bensouthgate in #28
- Use script with echo + sed instead of exec with task.WorkDir for rMATS create_bamlist by @olgabot in #29
- SL-17 Include star_salmon_quant rule in modules.config by @claire-prince in #30
- SL-21 Include enable.conda in configuration by @claire-prince in #32
- SL-18 Update SAMTOOLS_INDEX publishDir pattern by @claire-prince in #34
- SL-13 Add param to turn off DEXSeq.gff output save by @claire-prince in #31
- Merging template updates by @bensouthgate in #37
- Important! Template update for nf-core/tools v2.7.2 by @nf-core-bot in #36
- remove enable_conda param by @jma1991 in #38
- fix samplesheet location by @jma1991 in #40
- fix duplicate exons and star segfault by @jma1991 in #41
- Fix module tests by @jma1991 in #42
- fixed some pipeline and module tests by @jma1991 in #43
- update singularity and docker containers by @jma1991 in #45
- add basic tower.yml file by @jma1991 in #46
- remove default values specified as None by @jma1991 in #47
- Test full by @jma1991 in #48
- update process capacity by @jma1991 in #49
- Bam and visualisation by @jma1991 in #50
- v1 of contrasts by @jma1991 in #53
- Merging template updates by @jma1991 in #54
- Important! Template update for nf-core/tools v2.8 by @nf-core-bot in #51
- fix lint tests v1 by @jma1991 in #55
- release steps by @jma1991 in #56
- prettier CHANGELOG by @jma1991 in #59
- Fixed params.gencode in prepare_genome - issue #60 by @valentinoruggieri in #61
- Revert "Fixed params.gencode in prepare_genome - issue #60" by @jma1991 in #62
- remove sniffer by @jma1991 in #64
- Fixed gencode issues by @valentinoruggieri in #65
- Revert "Fixed gencode issues" by @jma1991 in #66
- resolve gencode fix by @jma1991 in #67
- initial pass of fixes by @jma1991 in #68
- V1.0.0 release fixes by @jma1991 in #77
- Merging template updates by @jma1991 in #79
- Important! Template update for nf-core/tools v2.9 by @nf-core-bot in #73
- Fixes MISO scratch/launch directory and gffread issue by @jma1991 in #80
- keep contrasts as array when only one level by @jma1991 in #82
- suppa fix attempt 1 by @jma1991 in #86
- replace across with combine to mimic SQL join by @jma1991 in #87
- refactor rmats contrasts by @jma1991 in #88
- Potential fix for MISO index issue by @jma1991 in #91
- Important! Template update for nf-core/tools v2.10 by @nf-core-bot in #92
- pre-release fixes by @jma1991 in #94
- 1.0.0 release of nf-core/rnasplice pipeline by @jma1991 in #57
New Contributors
- @bensouthgate made their first contribution in #2
- @asmaali98 made their first contribution in #17
- @olgabot made their first contribution in #29
- @claire-prince made their first contribution in #30
- @nf-core-bot made their first contribution in #36
- @jma1991 made their first contribution in #38
- @valentinoruggieri made their first contribution in #61
Full Changelog: https://github.com/nf-core/rnasplice/commits/1.0.0
Contributors
olgabot, jma1991, and 5 other contributors