Merge pull request #32 from nf-core/fix-download-pipeline-ci

Fix 'download_pipeline.yml' GHA workflow
nf-core · May 15, 2024 · c12a0cc · c12a0cc
2 parents 7ed732c + a6b8d15
commit c12a0cc
Showing 1 changed file with 1 addition and 8 deletions.
diff --git a/.github/workflows/download_pipeline.yml b/.github/workflows/download_pipeline.yml
@@ -76,11 +76,4 @@ jobs:
         env:
           NXF_SINGULARITY_CACHEDIR: ./
           NXF_SINGULARITY_HOME_MOUNT: true
-        run: nextflow run ./${{ env.REPOTITLE_LOWERCASE }}/$( sed 's/\W/_/g' <<< ${{ env.REPO_BRANCH }}) -stub -profile test,singularity --outdir ./results
-      - name: Run the downloaded pipeline (stub run not supported)
-        id: run_pipeline
-        if: ${{ job.steps.stub_run_pipeline.status == failure() }}
-        env:
-          NXF_SINGULARITY_CACHEDIR: ./
-          NXF_SINGULARITY_HOME_MOUNT: true
-        run: nextflow run ./${{ env.REPOTITLE_LOWERCASE }}/$( sed 's/\W/_/g' <<< ${{ env.REPO_BRANCH }}) -profile test,singularity --outdir ./results
+        run: nextflow run ./${{ env.REPOTITLE_LOWERCASE }}/$( sed 's/\W/_/g' <<< ${{ env.REPO_BRANCH }}) -stub -profile test_stub,singularity --outdir ./results