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Bump star version and port tests to nf-test #5529

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Bump star version and port tests to nf-test #5529

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Commits on Apr 26, 2024

  1. bump STAR, drop mulled container, fix tests

    @matthdsm
    matthdsm committed Apr 26, 2024
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  2. Merge branch 'master' into bump/star

    @matthdsm
    matthdsm committed Apr 26, 2024
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  3. prettier

    @matthdsm
    matthdsm committed Apr 26, 2024
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  4. linting

    @matthdsm
    matthdsm committed Apr 26, 2024
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Commits on Apr 29, 2024

  1. fix arriba tests

    @matthdsm
    matthdsm committed Apr 29, 2024
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  2. arriba: fix permission denied error

    @matthdsm
    matthdsm committed Apr 29, 2024
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  3. try to fix tests

    @matthdsm
    matthdsm committed Apr 29, 2024
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  4. Update modules/nf-core/arriba/arriba/tests/main.nf.test 

    Co-authored-by: Maxime U Garcia <max.u.garcia@gmail.com>
    @matthdsm @maxulysse
    matthdsm and maxulysse committed Apr 29, 2024
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Commits on May 23, 2024

  1. update star/align test

    @nvnieuwk
    nvnieuwk committed May 23, 2024
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  2. update star/genomegenerate snap

    @nvnieuwk
    nvnieuwk committed May 23, 2024
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  3. Merge branch 'master' into bump/star

    @nvnieuwk
    nvnieuwk committed May 23, 2024
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  4. fix fastq_align_dna snap

    @nvnieuwk
    nvnieuwk committed May 23, 2024
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  5. update genomegenerate container to seqera container

    @nvnieuwk
    nvnieuwk committed May 23, 2024
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  6. retry star with another container

    @nvnieuwk
    nvnieuwk committed May 23, 2024
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Commits on May 24, 2024

  1. reintroduce mulled

    @nvnieuwk
    nvnieuwk committed May 24, 2024
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  2. fix fastq_align_star tests

    @nvnieuwk
    nvnieuwk committed May 24, 2024
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Commits on May 27, 2024

  1. fix star/align tests

    @nvnieuwk
    nvnieuwk committed May 27, 2024
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  2. comment out the docker options

    @nvnieuwk
    nvnieuwk committed May 27, 2024
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  3. Merge branch 'master' into bump/star

    @nvnieuwk
    nvnieuwk committed May 27, 2024
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  4. add docker run options to all failing tests

    @nvnieuwk
    nvnieuwk committed May 27, 2024
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  5. Merge branch 'bump/star' of https://github.com/nf-core/modules into b… 

    …ump/star
    @nvnieuwk
    nvnieuwk committed May 27, 2024
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  6. test adding config to setup

    @nvnieuwk
    nvnieuwk committed May 27, 2024
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  7. add forgotten docker run options

    @nvnieuwk
    nvnieuwk committed May 27, 2024
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  8. let's see what this does

    @nvnieuwk
    nvnieuwk committed May 27, 2024
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