0.9.3: Google Tag

Updated Google Analytics Tag

0.9.2: Minor fixes

What’s Changed

• Ga4 with helmet (#1105) @rwblair
• FIx tests: downgrade Node (#1111) @adelavega
• FIX: Datalad installation path (#1107) @adelavega
• Expose dataset addreses to API (#1098) @adelavega
• FIX: Frontend tests (#1095) @adelavega
• EXT: TFHubAudioExtractor- SPICE pitch detection (#1094) @adelavega
• Fix Production docker build (#1091) @adelavega

0.9.1, add production Dockerfile

What’s Changed

• FIX: Dockerfile environment for production (#1089) @adelavega

v0.9

What’s Changed

• FIX: Deploy directory (#1086) @adelavega
• Add production mode and trigger deployment to staging (#1085) @adelavega
• Add build and push step to GH Actions (#1083) @adelavega
• Fix Cypress & upgrade to v10 (#1079) @adelavega
• make help in navbar a drop down (#1074) @rwblair
• FIX: Prettier errors (#1072) @adelavega
• Re-direct docs to neuroscout-docs (#1071) @adelavega
• Allow searching by dataset and task name (#1070) @adelavega
• update docs, add google colab (#1063) @jsmentch
• Google colab link + remove submission modal (#1061) @rwblair
• Logo refresh (#1058) @adelavega
• Fix tour (#1049) @rwblair
• Fix crash in review tab for some analyses. (#1050) @rwblair
• add appzi link to index.html (#1046) @rwblair
• Try mkdocs material (#1045) @adelavega
• Update Run page (#1041) @adelavega
• Predictor details / Dataset & Predictor pages (#1023) @rwblair
• Bump nltk from 3.6.5 to 3.6.6 in /neuroscout (#1032) @dependabot
• Revert "Bump pillow from 8.2.0 to 9.0.0 in /neuroscout" (#1030) @adelavega
• Bump nltk from 3.2.2 to 3.6.5 in /neuroscout (#1003) @dependabot
• Bump pillow from 8.2.0 to 9.0.0 in /neuroscout (#1017) @dependabot
• Bump ipython from 6.2.1 to 7.16.3 in /neuroscout (#1019) @dependabot
• Bump nanoid from 3.1.29 to 3.2.0 in /neuroscout/frontend (#1020) @dependabot
• Bump node-fetch from 2.6.5 to 2.6.7 in /neuroscout/frontend (#1021) @dependabot
• Bump follow-redirects from 1.14.4 to 1.14.8 in /neuroscout/frontend (#1026) @dependabot
• Bump url-parse from 1.5.3 to 1.5.7 in /neuroscout/frontend (#1028) @dependabot
• Update CLI docs (#1029) @adelavega
• Update CLI docs to reflect refactor (#1027) @adelavega
• don't display neurovault links on the submit page (#1025) @rwblair
• set resolver to dockers internal dns for first 30 seconds (#1002) @rwblair
• Extracted auditory and language features (#1014) @adelavega
• Add summary tab (#1007) @rwblair
• Nv indicator in analysis list (#998) @rwblair
• Restructure docs to separate Docker and Singularity (#1000) @adelavega
• Keep track of all cli_args for neurovault upload (#995) @adelavega
• Fix swagger nginx resolve (#993) @rwblair
• Bump tmpl from 1.0.4 to 1.0.5 in /neuroscout/frontend (#982) @dependabot
• [FIX] change keyserver to ubuntu (#983) @jdkent
• Filters for analysis table (#990) @rwblair
• Fix demographics (#989) @adelavega
• remove confusing sentence on hrf + transformations (#987) @rbroc
• unlink file after sucessfull upload (#973) @adelavega
• Dont add runs to bids model if all runids selected. (#971) @rwblair
• Filters and search for analysis table (#970) @rwblair
• Add as-Speech to feature schema (#966) @adelavega
• Ingest Narratives datasets (#952) @adelavega
• Fix empty stats models (#965) @rwblair
• Refresh homepage (#957) @adelavega
• Update frontend build process. (#945) @rwblair
• Bump dns-packet from 1.3.1 to 1.3.4 in /neuroscout/frontend (#944) @dependabot
• Use run id as a string for its value in report select dropdown. (#941) @rwblair
• Make tooltips more obvious, add modality tooltip, and fix modality numbers (#940) @adelavega
• update windowed extraction function (#938) @adelavega
• Improve cypress tests (#935) @rwblair
• Add log file in central location (#934) @adelavega
• Update transformers.json (#933) @adelavega
• add distinct extractor route (#931) @adelavega
• Bump flask-cors from 3.0.2 to 3.0.9 in /neuroscout (#929) @dependabot
• Update requirements.txt (#927) @adelavega
• Fix Correlation plot, and upgrade node to 12 (#928) @adelavega
• FIX: Nginx routing for gzip enable (#926) @adelavega
• try lazy loading Builder component (#924) @rwblair
• Update Pandas to be able to open Excel files during extraction (#922) @adelavega
• Gzip files, by serving w/ nginx not flask (#925) @adelavega
• set scale to default to false on report plots if we get a report without scaling informaiton (#917) @rwblair
• Fix HRF duration (#916) @adelavega
• Update docs to reflect new CLI directory structure (#912) @adelavega
• Update predictor tab (#870) @rwblair
• Fix BERT extract, serializing (#904) @adelavega
• Add active column for runs, and fix minor compilation issue (#903) @adelavega
• Reading brain ingest (#895) @adelavega
• Configure nginx-proxy (#896) @adelavega
• Bump jinja2 from 2.10.1 to 2.11.3 in /neuroscout (#894) @dependabot
• Add stimulus timing route (#891) @adelavega
• GH Action to build and publish mkdocks (#888) @adelavega
• Add summary metrics to Predictors route (#885) @adelavega
• Serialize objects early to save memory (#879) @adelavega
• Add Extractor description API route (#878) @adelavega
• Improve extraction speed (#875) @adelavega
• Video to Frame conversion for NND (#869) @adelavega

New Year New Neuroscout

What’s Changed

• Add end-to-end frontend testing using Cypress (#847) @adelavega
• Switch to Github Actions for CI (#861) @adelavega
• Ingest Naturalistic Neuroimaging Database (#849) @adelavega
• Bump vega from 5.9.1 to 5.17.3 in /neuroscout/frontend (#859) @dependabot
• Bump pillow from 6.2.0 to 7.1.0 in /neuroscout (#858) @dependabot
• Bump urijs from 1.19.2 to 1.19.5 in /neuroscout/frontend (#860) @dependabot
• Bump ini from 1.3.5 to 1.3.7 in /neuroscout/frontend (#853) @dependabot
• Graph extraction, across all active datasets, plus downsampling of features (#844) @adelavega
• Password retype and friends (#841) @rwblair
• Log neuroscout-cli and fmriprep versions when uploading results (#840) @adelavega
• Various UI improvements + Pybids 0.12.3 (#837) @adelavega
• September grab bag (#819) @rwblair
• Add "Budapest" dataset (#807) @adelavega
• Bump serialize-javascript from 2.1.2 to 3.1.0 in /neuroscout/frontend (#809) @dependabot
• Bump http-proxy from 1.18.0 to 1.18.1 in /neuroscout/frontend (#814) @dependabot
• Update to Marshamallow 3, also upgrade webargs flask_apispec (#816) @adelavega
• Speed up and fix My Analyses (#811) @adelavega
• Add user profiles (#791) @adelavega
• Bump elliptic from 6.5.2 to 6.5.3 in /neuroscout/frontend (#808) @dependabot
• Add docs about predictor upload (#806) @adelavega
• Require Predictor Collection name (#805) @adelavega
• Remove logical operations (#804) @adelavega
• Pin setuptools version, until setuptools fixed (#803) @adelavega
• Bump lodash from 4.17.15 to 4.17.19 in /neuroscout/frontend (#800) @dependabot
• If user is loading new empty analysis lets assume they own it. (#799) @rwblair
• Remove defunct report args (#796) @adelavega
• Update bibliography (#792) @adelavega
• Scale/Unscale button for interactive reports (#788) @adelavega
• Adds loading spinner for public/private analyses list. (#787) @rwblair
• check if analysis is public or owned before rendering analysis builder in routes (#764) @rwblair
• Fix extractor source not updating in certain cases. (#783) @rwblair
• Add stimulus timing to /predictor-events route (#782) @adelavega
• Bump websocket-extensions from 0.1.3 to 0.1.4 in /neuroscout/frontend (#777) @dependabot
• Save partial layout (#780) @adelavega
• Partially index meta-data in reports (#778) @adelavega
• Speed up reports - optimize creation of PEs (#775) @adelavega
• Fix division by zero error when empty predictor (#773) @adelavega
• Add graphs to windowed extraction (#756) @adelavega
• Add basename path to nv file upload (#758) @adelavega
• Truncate NV Collection names to 200 chars (#757) @adelavega
• Fix logic when regenerating available runs from existing model. (#754) @rwblair
• FIX: Contrast: Type not ContrastType (#753) @adelavega
• missing cron package (#747) @bpinsard
• Extract Audioset Labels (#743) @adelavega

0.7 -- pre-corona virus

What’s Changed

• Truncate contrast name in NV upload (#740) @adelavega
• Extract Sensorimotor Norms (#739) @adelavega
• Context-dependent word level estimates (#734) @adelavega
• Add f test to upload types (#738) @adelavega
• Active_only in predictor route, not just active (#733) @adelavega
• FeatureSchema: num_faces is not categorical (#732) @adelavega
• Deactivate categorical variables (#731) @adelavega
• Generate warnings in report (#725) @adelavega
• Security updates (#727) @rwblair
• Dataset list refactor (#724) @adelavega
• Dedupe auto contrasts (#723) @rwblair
• Remove last mentions of AutoContrasts (#722) @adelavega
• Restore predictor-events route, dumps extracted events (#720) @adelavega
• Add ability to generate and view reports for any run. (#716) @rwblair
• Add missing binarize option. (#718) @adelavega
• FIX: Filter Task using dataset_id, MNT: Upgrade postgres to 12 (#715) @adelavega
• force reconstruct of review tab for fresh results on model change (#712) @rwblair
• Add hash_id to collection_name NV upload (#711) @adelavega
• Fix ingestion issues with multiple tasks (#709) @adelavega
• small fixes to docs (#703) @rbroc

0.6 -- last one of the decade

What’s Changed

• always add subject level to bidsmodel #641 (#648) @rwblair
• Fix travis ffmpeg PPA (#694) @adelavega
• MNT: Add motion outlier (fmriprep) to predictor schema (#693) @adelavega
• added warning on google accounts and pyNS (#688) @rbroc
• DOC: Add basic Neuroscout Documentation (#685) @adelavega
• Show NV collections in full analysis route (#684) @adelavega
• Enhance report plots (#682) @adelavega
• Bump pillow from 5.4.1 to 6.2.0 in /neuroscout (#681) @dependabot
• Fix variance API type (#677) @adelavega
• Add sentry to front end and backend. (#672) @rwblair
• Add known issues field (#676) @adelavega
• Update Sherlock Merlin (#675) @adelavega
• forgot to format variable in string properly (#674) @rwblair
• Add ReplaceNA to scale xform, fix unselect all predictors error. (#671) @rwblair
• predictor table header width fix (#670) @rwblair
• update neurovault upload status component/api calls (#669) @rwblair
• Adds version to bundles (#668) @adelavega
• Fix analyses not showing on logout -> login (#667) @rwblair
• Predictor upload components (#631) @rwblair
• Write out empty dfs for missing predictors (#665) @adelavega

v0.5 -- summer please end

What’s Changed

• Migrations catchup (#651) @adelavega
• Have report tooltip follow same display rules as rest of anlysis buil… (#647) @rwblair
• Bump werkzeug from 0.12.1 to 0.15.3 in /neuroscout (#644) @dependabot
• Bump flask from 0.12.4 to 1.0 in /neuroscout (#646) @dependabot
• calmer auto contrasts (#643) @rwblair
• Index / db maintenance (#640) @adelavega
• Add new datasets, and update feature schema for RMS (#638) @adelavega
• Update convert.py (#637) @adelavega
• Revert "Use derivatives = false to exclude preprocessed files" (#636) @adelavega
• Use derivatives = false to exclude preprocessed files (#635) @adelavega
• Use json string for collection description (#634) @adelavega
• Fix get predictors collection id name (#633) @adelavega
• Add optional description to predictor upload (#632) @adelavega
• Fix create predictor collection (#628) @adelavega
• Only show tooltips on correct tab, fix highlighting, update FAQ, and fix account creation name problem. (#622) @rwblair
• Add unit tests to Celery tasks (#617) @adelavega
• Add analytics, reorg front end code (#616) @rwblair
• Add predictor/collection upload route (#611) @adelavega
• Neuroscout tour + tooltips in Builder (#607) @adelavega
• Avoid re-doing report for minor post-DRAFT changes (#608) @adelavega
• Minor post OHBM enhancements (#606) @adelavega

0.4 -- ohbm release

This release reflects what was presented at OHBM.

What’s Changed

• Fix normalize dm, and remove some transforms (#597) @adelavega
• Add button to convolve all non fmriprep predictors. (#588) @rwblair
• [WIP] Link to neurovault uploads. (#584) @rwblair
• filter out contrasts whose source is 'fmriprep' in autocontrast creation (#587) @rwblair
• Simpler NV uploads (#583) @adelavega
• Remove links to unfinished features (#580) @adelavega
• Closes #532 (#579) @adelavega
• Fix tarball upload (#578) @adelavega
• 576 fix no task stat model (#577) @rwblair
• Integrate celery to flask context for db (#575) @adelavega
• Fix bibliography + database backups, add scaling to DM plots (#571) @adelavega
• Fixes for frontend regressions. (#566) @rwblair
• Extract additional language features (#568) @adelavega
• Ingest Rev API Text (#558) @adelavega
• Fix subtlexusfrequency descriptions (#554) @adelavega
• Enh/add new variables (#553) @adelavega
• Add postgres password to docker-compose and example config (#552) @adelavega
• Add kwarg options to GET analysis (#550) @adelavega
• Compile bilbiography for analyses (#547) @adelavega

0.3.2

What’s Changed

• Fix github vulnerabilities (#546) @adelavega
• Renamed .zenodo to .zenodo.json