Merge pull request #861 from neuroscout/github_actions

Switch to Github Actions for CI

.github/workflows/tests.yml

@@ -0,0 +1,48 @@
+name: Neuroscout tests
+
+on: [push, pull_request]
+
+jobs:
+  test:
+    name: pytest
+    runs-on: ubuntu-latest
+    env:
+      APP_SETTINGS: neuroscout.config.app.GHIConfig
+      PYTHONHASHSEED: 0
+    services:
+      postgres:
+        image: postgres:12
+        env:
+          POSTGRES_PASSWORD: password
+          POSTGRES_DB: travis_ci_test
+        ports:
+          - 5432:5432
+        options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5
+    steps:
+    - uses: actions/checkout@v2
+    - name: Set up Python
+      uses: actions/setup-python@v2
+      with:
+        python-version: 3.6
+    - name: Set up system dependencies
+      run: |
+        bash <(wget -q -O- http://neuro.debian.net/_files/neurodebian-travis.sh)
+        sudo apt-get -qq update
+        sudo apt-get install -yq git-annex-standalone tesseract-ocr libavformat-dev libavfilter-dev libavdevice-dev ffmpeg
+        cp neuroscout/config/example_app.py neuroscout/config/app.py
+        cp neuroscout/frontend/src/config.ts.example neuroscout/frontend/src/config.ts
+    - uses: actions/cache@v2
+      with:
+        path: ~/.cache/pip
+        key: ${{ hashFiles('neuroscout/setup.py') }}-${{ hashFiles('neuroscout/requirements.txt') }}
+    - name: Install Python dependencies
+      run: |
+        python -m pip install --upgrade pip wheel
+        python -m pip install -U setuptools==45 pytest-cov
+        python -m pip install -r neuroscout/requirements.txt
+        python -m pip install -e git+https://github.com/PsychoinformaticsLab/pliers.git#egg=pliers
+        python -m pliers.support.download
+    - name: Test with pytest
+      run: |
+        python -m pytest neuroscout/tests/ --cov=./neuroscout --cov-report xml
+    - uses: codecov/codecov-action@v1

neuroscout/config/example_app.py

@@ -63,6 +63,6 @@ class DockerTestConfig(TestingConfig):
     FILE_DIR = Path('/tmp/file-data')
 
 
-class TravisConfig(TestingConfig):
-    SQLALCHEMY_DATABASE_URI = "postgresql://postgres@localhost/travis_ci_test"
+class GHIConfig(TestingConfig):
+    SQLALCHEMY_DATABASE_URI = "postgresql://postgres:password@localhost/travis_ci_test"
     FILE_DIR = Path('./tmp/file-data').absolute()

neuroscout/requirements.txt

@@ -50,11 +50,10 @@ patsy
 Pillow==7.1.0
 progressbar2
 psycopg2==2.8.3
-py==1.4.33
 PyJWT==1.4.2
 pyld==0.7.3
 pyparsing==2.2.0
-pytest==3.0.7
+pytest>4.6
 python-dateutil==2.6.0
 python-magic==0.4.13
 pytz==2017.2