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EpiCompare failing on Bioc Windows #153
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Hey @serachoi1230 , just a reminder than EpiCompare is still failing on Bioc. Can you look into resolving this as soon as you can? Thanks |
@serachoi1230 it looks like Let us know if you think you'll be able to maintain |
@NathanSkene @Al-Murphy, we should have a broader discussion about how the Neurogenomics Lab plans to maintain its software in the long run. i.e. who gets assigned Maintainer status once someone leaves the lab. |
Hey @bschilder! Thanks for this and sorry for this super late reply! I think it would be best to transfer the maintainership as it's getting more and more difficult for me to maintain EpiCompare sadly! Please could you let me know who I'm handing over to and what needs to be done? Thanks so much again Brian! |
I’ll have a chat with Thomas about him taking over
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Subject: Re: [neurogenomics/EpiCompare] EpiCompare failing on Bioc Windows (Issue #153)
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Hey @bschilder<https://github.com/bschilder>! Thanks for this and sorry for this super late reply! I think it would be best to transfer the maintainership as it's getting more and more difficult for me to maintain EpiCompare sadly!
Please could you let me know who I'm handing over to and what needs to be done?
Thanks so much again Brian!
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Great idea, thanks @NathanSkene ! |
No worries @serachoi1230 , I think it's totally reasonable for you to focus on your current work rather than maintaining this indefinitely. We may come you occasionally if there's parts of the code we don't quite understand, but we'll transition maintainership to dedicated personnel within the lab. @Al-Murphy do you know if there's a proper way to transfer maintainership? I've seen people do this by emailing the general bioc-devel@r-project.org mailing list, but not sure if there's a more official way to do it. |
I actually think you have to email about it for them to transfer on their end, doesn't seem to be much online about it? |
Cool, @Tomrrr1 and @NathanSkene are meeting tomorrow to discuss transiting maintainership tomorrow. In the meantime, here are some important notes from the Bioc team about the upcoming release: Send to the bioc devel mailing list on Oct 23 2023:
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@serachoi1230 could you please send an email to the Bioc team via bioc-devel@r-project.org and request them to transfer maintainership of Tom Roberts |
Hi @Tomrrr1, do you have BiocCredentials account? |
Hi @serachoi1230, No I do not have an account. Is there a link I can use to setup one? |
Here you go @Tomrrr1 : https://git.bioconductor.org/BiocCredentials/login/?next=/BiocCredentials/ |
No worries @Tomrrr1 @bschilder ! I emailed Bioconductor and they said they'll create an account for you and give access to EpiCompare. I've cc'ed you in the email |
Great! thanks @serachoi1230 @bschilder |
1. Bug description
Failing on Windows Bioc server:
https://bioconductor.org/packages/release/bioc/html/EpiCompare.html
http://bioconductor.org/checkResults/release/bioc-LATEST/EpiCompare/palomino3-buildsrc.html
Console output
Expected behaviour
Passes all Bioc checks.
2. Reproducible example
Knitting the following file:
https://github.com/neurogenomics/EpiCompare/blob/master/vignettes/EpiCompare.Rmd
3. Session info
http://bioconductor.org/checkResults/release/bioc-LATEST/EpiCompare/palomino3-buildsrc.html
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