v16.14.0

Command-line tool

• Fixed a bug with the dataformat --package flag.

Documentation

• Added documentation page for genome quality analysis methods for BUSCO, CheckM, and Foreign Contamination Screening.

Features

• Add rank filter to datasets taxonomy taxon, data_report, and name_report API endpoints.

v16.13.0

Documentation

• Updated the warning banner on the v1 documentation pages to include a link to the command line download and install page.
• Updated the Genome Notes page to include additional categories.
• Updated the Glossary page.
• Updated the Genome selected for RefSeq Annotation page to include information on prokaryotic and viral genomes.

Features

• Added a new field for sequence name (sequenceName) to the sequence data report

v16.12.1

DOCS

• Release new NCBI Assembly Data Model documentation page

Bugs

• Fixed a bug with taxonomy summary and data package requests for child nodes.

v16.12.0

Documentation

• Added taxonomy how-to to get taxonomy_summary.tsv.
• Added new Genome FTP documentation page.

Bugs

• Fixed a bug in the taxonomy tsv download on the taxonomy names page that limited the number of rows in the tsv.
• Fixed a bug in the taxonomy browser that caused page loading failures.

v16.11.0

CLI

• Bug Fixes: Removed unexpected error message from the taxonomy dataformat tsv output

• Features: Updated the rules for data retrieval by taxonomic names (scientific or common) in the datasets command-line tool. Supported names are described in the taxonomy names report and include the following fields:

  • current scientific name
  • curator common name
  • curator synonym

v16.10.3

Services

• Implemented improvements to enhance the stability of the taxonomy autosuggest feature

v16.10.2

Documentation

• Update CLI image in GitHub docs and Datasets docs to include the taxonomy subcommand.

Services

• Bug Fixes: Corrected an issue causing the --children flag to fail with specific taxonomic identifiers (taxids).

v16.10.1

Docs

• Bug Fixes: Update taxonomy and taxonomy names report schemas

v16.10.0

Documentation

• Feature: Add taxonomy data package page
• Bug Fixes: Restore navbar to documentation pages

v16.9.0

CLI

• Features: Implement dataformat template flag for taxonomy
• Bug Fixes: Fix command line ortholog requests

Docs

• Improvement: Update one protein tutorial to use scientific names