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Zoobot v2 release #114

Merged
merged 323 commits into from
Apr 4, 2024
Merged

Zoobot v2 release #114

merged 323 commits into from
Apr 4, 2024
This pull request is big! We’re only showing the most recent 250 commits.

Commits on Nov 6, 2023

  1. revert to 

    single gpu ramdisk 6 workers b256
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    mwalmsley committed Nov 6, 2023
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  2. ramdisk

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Commits on Nov 7, 2023

  1. test on beluga

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  2. debug sympy

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  3. longer run, more workers/cpus

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  4. oops slash

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  5. fine, normal python

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  6. try 4 gpu v100, 9 workers, ramdisk

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  7. still 4 gpu, now on SSD instead

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  8. only 3 workers per

    @mwalmsley
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  9. back to a100 big boy test

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  10. 2 a100

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  11. debug nodesplitter

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  12. debug generator

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  13. slurm tinkering

    @mwalmsley
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  14. oops, 4 gpu

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  15. better logging

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  16. more logging

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  17. typo

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  18. repeat=1 for debugging still, add replace_sampler_ddp flag

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  19. 2.1 update

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  20. typo

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  21. 2 gpu scaling

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  22. 2 gpu

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  23. logging

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  24. 1 gpu

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  25. scaling of a100 2x repeat5x

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  26. worked great, now 4x with the split

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Commits on Nov 9, 2023

  1. add notes

    @mwalmsley
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  2. Merge branch 'narval-migration' of https://github.com/mwalmsley/zoobot … 

    …into narval-migration
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Commits on Nov 18, 2023

  1. refactor, add mock wds func

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Commits on Nov 19, 2023

  1. mock wds training works locally, try on beluga

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  2. force commit sh

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  3. request less

    @mwalmsley
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  4. single gpu?

    @mwalmsley
    mwalmsley committed Nov 19, 2023
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  5. use tmpdir

    @mwalmsley
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  6. it doesn't split! add my logging

    @mwalmsley
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  7. make once and exit

    @mwalmsley
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  8. 1 task only

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  9. run on premade shards

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  10. it worked - 8 batches? try 4 gpus

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  11. 4 gpu works! how about 2 nodes, 4 gpu each?

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  12. Multi-node works. Clean up.

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Commits on Nov 20, 2023

  1. prepare to update dependencies

    @mwalmsley
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  2. make desi labelled webdatasets

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  3. typo

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  4. runs, 2xv100 next

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  5. typo

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  6. 4 gpu

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  7. typo

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Commits on Nov 21, 2023

  1. hangs during val metrics. Try disable wandb

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  2. csv logger

    @mwalmsley
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  3. wandb again but rank 0 only logging

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  4. it's not wandb. Try disable all self.log

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  5. disable checkpointing callback

    @mwalmsley
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  6. limit batches, num_workers=1

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  7. works with limit_batches and num_workers=1. 

    likely caused by unequal numbers of validation batches
remove limit_batches, see if it breaks
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  8. broken with num_workers =1 and without train/val batch limit 

    restore num_workers=5 and val_batch limit
theory is it's the val batches being unequal
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  9. try with 2 gpu, 5 dataloader per, 10 chunks in train/val 

    exactly equal split is possible
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  10. it runs with precisely split dataloaders and limit_val=1 

    try without limit_val=1 and a larger (but still exactly equal) split
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  11. add callbacks back

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  12. restore sync_dist (since metrics were not the problem) 

    experiment with torch.compile
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  13. training_step not compiling due to batch_idx arg changing 

    try to remove batch_idx at least from my own funcs (but it's built into lightning)
also increase cache massively
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  14. 60 shards without compile

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  15. run longer

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  16. 23 hours

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  17. try compile just the encoder

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  18. compile encoder, works well locally

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  19. add notes

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  20. single v100 with 10 cpu/workers

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  21. runs great on 1 gpu. Restart with save dir

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Commits on Nov 22, 2023

  1. try train small-dim model, 2 gpu

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  2. typo

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  3. pass aug args 

    add timm kwargs option
also need to clone timm (temp?)
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  4. typo

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  5. test priority

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  6. v2

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  7. it works, queue for 23h full run

    @mwalmsley
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  8. try 512 features

    @mwalmsley
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  9. restart 2gpu

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  10. minimal transforms only speed test

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  11. it is def CPU limited. Add even more CPUs

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Commits on Nov 23, 2023

  1. set up for 300px training runs

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  2. Merge pull request #111 from mwalmsley/dependencies 

    Update to latest dependencies
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  3. typo

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  4. prediction adjustments

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  5. try maxvit on desi only

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  6. tweaks

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  7. maxvit runs, try 4 gpu in case small batches break

    @mwalmsley
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  8. fix race condition

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  9. effnet v2 on 1 gpu

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  10. typo

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  11. try pit xs

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  12. pit s 64

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  13. notes on closing

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  14. pit s at b256 with 4 gpu

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  15. typo

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  16. xs 4 gpu why not

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  17. 4gpu b0 why not

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  18. maxvit_rmlp_small_rw_224

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  19. vit small

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  20. vit tiny

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Commits on Nov 24, 2023

  1. retry v2b0 4gpu

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  2. typo

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  3. normal effnet 4gpu redo

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  4. pit xs 4gpu redo

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  5. maxvit_rmlp_small_rw

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  6. pit s

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  7. convnext tiny 1gpu

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  8. effnet b2

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  9. convnext small

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  10. typo

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  11. typo

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  12. try effnetb4

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  13. effnet b5

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  14. maxvit_rmlp_base_rw_224

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  15. maxvit_rmlp_base_rw_224 on 16 gpus, just becase

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  16. cache dir on multinode

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    mwalmsley committed Nov 24, 2023
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  17. 5 worker version

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  18. ran but hit nans, add gradient clip and w=0.05

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  19. runs, restart w/ 4 gpu

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  20. wds support for ZoobotEncoder

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    mwalmsley committed Nov 24, 2023
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  21. autofill label cols

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  22. debug mismatched shuffle

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Commits on Nov 25, 2023

  1. rmlp base 4gpu

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  2. subset frac

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Commits on Nov 30, 2023

  1. prepare for terrestrial

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  2. 1 gpu

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  3. typo

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  4. request less time

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  5. try with terrestrial init, no norm

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  6. timm kwargs instead

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  7. silly typo

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  8. 4 gpu for speed, if it starts

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  9. effnet terrestrial

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  10. dash missing

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  11. little longer

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  12. maxvit overfit faster last time at higher batch size 

    can I add a little weight decay and see if it helps
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Commits on Dec 1, 2023

  1. try base from terrestrial init

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Commits on Dec 8, 2023

  1. refactor narval changes out of zoobot

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Commits on Dec 19, 2023

  1. add per-q and per-campaign logging via schema metadata

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  2. overwrite

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    mwalmsley committed Dec 19, 2023
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  3. Merge branch 'narval-migration' of https://github.com/mwalmsley/zoobot … 

    …into narval-migration
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Commits on Dec 20, 2023

  1. temporarily force double

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    mwalmsley committed Dec 20, 2023
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  2. force int labels

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    mwalmsley committed Dec 20, 2023
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  3. log q/campaign losses with only rel. galaxies

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    mwalmsley committed Dec 20, 2023
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  4. change floor

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  5. .int() for DirichletMultionial

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    mwalmsley committed Dec 20, 2023
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  6. completely rework logging

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    mwalmsley committed Dec 20, 2023
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  7. typo

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  8. typo

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  9. continuing metric rework

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Commits on Dec 25, 2023

  1. tweaks for foundation

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Commits on Jan 2, 2024

  1. small changes for new models

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Commits on Jan 3, 2024

  1. small ssl tweaks

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Commits on Jan 4, 2024

  1. ukidss schema

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  2. Merge branch 'narval-migration' of https://github.com/mwalmsley/zoobot … 

    …into narval-migration
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  3. ssl changes

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    mwalmsley committed Jan 4, 2024
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Commits on Jan 5, 2024

  1. torchrgb

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Commits on Jan 8, 2024

  1. needs merge

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  2. Merge branch 'narval-migration' of https://github.com/mwalmsley/zoobot … 

    …into narval-migration
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Commits on Jan 12, 2024

  1. allow nan strat

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    mwalmsley committed Jan 12, 2024
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  2. Merge branch 'narval-migration' of github.com:mwalmsley/zoobot into n… 

    …arval-migration
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Commits on Jan 15, 2024

  1. debugging

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    mwalmsley committed Jan 15, 2024
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  2. update labeldict

    @mwalmsley
    mwalmsley committed Jan 15, 2024
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  3. revert datamodule

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    mwalmsley committed Jan 15, 2024
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  4. add test dataloader

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    mwalmsley committed Jan 15, 2024
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  5. add test metrics

    @mwalmsley
    mwalmsley committed Jan 15, 2024
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  6. debug test metrics not appearing

    @mwalmsley
    mwalmsley committed Jan 15, 2024
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  7. tweak logging

    @mwalmsley
    mwalmsley committed Jan 15, 2024
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  8. seems to block on multi-g

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  9. maybe it's the datamodule

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  10. num_workers=1, move test_trainer

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  11. check if it is logging or wds

    @mwalmsley
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  12. it ran. now logging back on

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Commits on Jan 16, 2024

  1. oops, broke logging

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    mwalmsley committed Jan 16, 2024
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  2. fix prog bar

    @mwalmsley
    mwalmsley committed Jan 16, 2024
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  3. try with aug fix

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    mwalmsley committed Jan 16, 2024
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Commits on Jan 19, 2024

  1. train effnetv2xl on evo

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Commits on Jan 29, 2024

  1. careful with nans

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Commits on Feb 1, 2024

  1. ft tweaks

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  2. Merge branch 'narval-migration' of https://github.com/mwalmsley/zoobot … 

    …into narval-migration
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Commits on Feb 5, 2024

  1. prep for 2.0

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  2. Merge branch 'narval-migration' of github.com:mwalmsley/zoobot into n… 

    …arval-migration
    @mwalmsley
    mwalmsley committed Feb 5, 2024
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  3. typo

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Commits on Feb 6, 2024

  1. maxvit fix

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Commits on Feb 8, 2024

  1. add sync batchnorm option

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Commits on Feb 9, 2024

  1. try sync again

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Commits on Feb 11, 2024

  1. fix encoder dim

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    mwalmsley committed Feb 11, 2024
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Commits on Feb 26, 2024

  1. unit interval

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Commits on Feb 27, 2024

  1. typo

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    mwalmsley committed Feb 27, 2024
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  2. fix typo

    @mwalmsley
    mwalmsley committed Feb 27, 2024
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  3. add convnext support

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    mwalmsley committed Feb 27, 2024
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  4. docs

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    mwalmsley committed Feb 27, 2024
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Commits on Mar 1, 2024

  1. add cosine support

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    mwalmsley committed Mar 1, 2024
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  2. two fixes 

    wds loads /255**2 wrongly, leave but warn
finetune never tuned batchnorm, raise error
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Commits on Mar 2, 2024

  1. add cosine logging

    @mwalmsley
    mwalmsley committed Mar 2, 2024
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  2. simplify

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  3. pure pytorch?

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    mwalmsley committed Mar 2, 2024
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  4. cosine logging

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    mwalmsley committed Mar 2, 2024
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  5. partially reverse two fixes changes

    @mwalmsley
    mwalmsley committed Mar 2, 2024
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  6. carefully start adding back

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    mwalmsley committed Mar 2, 2024
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  7. try cosine uncommented but False

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  8. add a warning

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    mwalmsley committed Mar 2, 2024
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  9. torch cosine

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Commits on Mar 5, 2024

  1. remove mae

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  2. remove a little more

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Commits on Mar 8, 2024

  1. minor cleanup

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  2. Merge pull request #112 from mwalmsley/narval-migration 

    Prepare for v2 release
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Commits on Mar 14, 2024

  1. add from_scratch override

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    mwalmsley committed Mar 14, 2024
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Commits on Mar 15, 2024

  1. load 0-1 webdatasets, add note

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  2. Merge branch 'narval-migration' of https://github.com/mwalmsley/zoobot … 

    …into narval-migration
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Commits on Mar 19, 2024

  1. make models portable

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  2. typo

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    mwalmsley committed Mar 19, 2024
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  3. try on colab

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    mwalmsley committed Mar 19, 2024
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Commits on Mar 21, 2024

  1. enforce 0-1 input

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  2. Merge branch 'narval-migration' of https://github.com/mwalmsley/zoobot … 

    …into narval-migration
    @mwalmsley
    mwalmsley committed Mar 21, 2024
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  3. bump galaxy-datasets

    @mwalmsley
    mwalmsley committed Mar 21, 2024
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  4. add webdataset

    @mwalmsley
    mwalmsley committed Mar 21, 2024
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  5. require schema-like args

    @mwalmsley
    mwalmsley committed Mar 21, 2024
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  6. bump again

    @mwalmsley
    mwalmsley committed Mar 21, 2024
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  7. bump to python 3.9

    @mwalmsley
    mwalmsley committed Mar 21, 2024
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  8. Merge pull request #113 from mwalmsley/narval-migration 

    Latest finetuning changes
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    mwalmsley committed Mar 21, 2024
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Commits on Mar 29, 2024

  1. grab lightly cosine

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Commits on Mar 30, 2024

  1. add docstrings throughout

    @mwalmsley
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  2. num_classes=0

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    mwalmsley committed Mar 30, 2024
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  3. tinker to set cluster vars

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    mwalmsley committed Mar 30, 2024
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  4. require galaxy-datasets

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    mwalmsley committed Mar 30, 2024
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Commits on Mar 31, 2024

  1. tiny tweak

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    mwalmsley committed Mar 31, 2024
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  2. add mae support

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    mwalmsley committed Mar 31, 2024
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  3. Merge branch 'dev' of github.com:mwalmsley/zoobot into dev

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    mwalmsley committed Mar 31, 2024
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  4. small note

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    mwalmsley committed Mar 31, 2024
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  5. Merge branch 'dev' of github.com:mwalmsley/zoobot into dev

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    mwalmsley committed Mar 31, 2024
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  6. typo

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    mwalmsley committed Mar 31, 2024
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  7. change color->greyscale for consistency

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    mwalmsley committed Mar 31, 2024
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  8. add cosine scheduler option

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    mwalmsley committed Mar 31, 2024
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  9. imports

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    mwalmsley committed Mar 31, 2024
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  10. typo

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    mwalmsley committed Mar 31, 2024
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  11. check tasks per node

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    mwalmsley committed Mar 31, 2024
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Commits on Apr 3, 2024

  1. docs pass

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    mwalmsley committed Apr 3, 2024
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  2. Continue docs pass

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    mwalmsley committed Apr 3, 2024
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  3. docsing

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    mwalmsley committed Apr 3, 2024
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  4. readthedocs

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    mwalmsley committed Apr 3, 2024
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  5. m1

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    mwalmsley committed Apr 3, 2024
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  6. add sphinxemoji (vital)

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    mwalmsley committed Apr 3, 2024
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  7. typo

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    mwalmsley committed Apr 3, 2024
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  8. rebuild

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    mwalmsley committed Apr 3, 2024
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Commits on Apr 4, 2024

  1. final docs update?

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    mwalmsley committed Apr 4, 2024
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  2. Merge branch 'main' into dev

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    mwalmsley committed Apr 4, 2024
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  3. tiny tweaks

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    mwalmsley committed Apr 4, 2024
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