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depth-weighted version for wMEM #13

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depth-weighted version for wMEM #13

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@Edouard2laire Edouard2laire commented Nov 2, 2023 •
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This update implements several updates to wMEM. Also, add the support of fNIRS data.

The addition includes:

  • Support of depth-weighting
  • Fixed parcellation
  • New alpha initialization using MNE ( alpha method = 6)
  • New noise covariance calculation (NoiseCov method = 6)
  • Baseline shuffling for resting state analysis

Bugfixes:

  • wMEM: improve the support of multimodal data fusion.

@Edouard2laire Edouard2laire added the enhancement New feature or request label Nov 3, 2023
@Edouard2laire Edouard2laire self-assigned this Nov 3, 2023
@Edouard2laire Edouard2laire mentioned this pull request May 14, 2024
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Edouard2laire and others added 28 commits May 14, 2024 17:45
@Edouard2laire
Merge branch 'master' into wMEM
e8b10c6
@Edouard2laire
update default options
e5ecc1f
@Edouard2laire
adjust windows size
4ba8ace
restore 'activate MEM Display' option while changing pipeline
95f669a
@ilianAZZ
Saving time window settings on pipeline changes
f32699b
@ilianAZZ
replace optimization routing txt with combo
3723a3e
@ilianAZZ
Saving optimization routine on pipeline change
ccd25d6
@ilianAZZ
creating "Can use fminuc" function
6f7ff0e
@ilianAZZ
Fix function output var name
8862583
@ilianAZZ
remove fminunc function from combo if not avaiable
c49c728
@ilianAZZ
Saving baseline segments on pipeline change
b096f39
@Edouard2laire
Merge pull request #4 from ilianAZZ/save-preferencies
6e06565 
Save preferencies on pipeline change
@Edouard2laire
[optim] pre-compute sigma_s before the loop
77e0c4f
@Edouard2laire
more optim
9a6f274
@Edouard2laire
[optim] optimize the store of the wmem solution
c431ffa
@Edouard2laire
optimize wMEM output
dc7d387
@Edouard2laire
only call be_wavelet_inverse ones
9fb2c21
@Edouard2laire
Move the sample selectionto be_launch_mem
0a18be4
@Edouard2laire
Merge branch 'master' into wMEM
3ebfd51
@ilianAZZ
Changing logical way to show/hide expert panels
663488e
@ilianAZZ
fix overflow ui bug
79a5e02
@ilianAZZ
Fix inversion in button text : "Hide" "Show"
a2318dd
@ilianAZZ
FIx involuntary added tab
4779348
@Edouard2laire
Merge pull request #6 from ilianAZZ/fix-gui-hidden-panel
0dfdfab 
Fix GUI display glich
@Edouard2laire
[bugfix] fix mne
2cb600d
@Edouard2laire
fix option export
1a959d3
@Edouard2laire
Merge pull request #5 from Edouard2laire/optim_wmem
f32351b 
optimize wMEM output
@Edouard2laire
[bugfix] use be_struct_copy_fields when possible
b8dbb98
@Edouard2laire Edouard2laire mentioned this pull request May 29, 2024
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@Edouard2laire @Jawata07 @rcassani @ilianAZZ