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1. PDP PDP Public

   This is an implementation of three algorithms for partial digest problem (PDP) which are BBd, BBb and BBb2. The BBd algorithm (Skiena 90) solves PDP by traversing the solution tree in depth first m…

   C++ 2

2. RNAPip RNAPip Public

   RNA seq analysis

   Python

3. Create_gene_Info_for_exons Create_gene_Info_for_exons Public

   This scripts to create the geneInfo file for exons from the input of gtf and genome files

   Python

4. Analy_of_fastqc_result Analy_of_fastqc_result Public

   This to take summary from many fastqc results such that the result of each file in a separate folder

   Python

5. geneInfo geneInfo Public

   This is R code to collect the geneInfo file for the genes in the file gene_id.txt using the library biomaRt

   R

6. Clustering Clustering Public

   This is a R script for clustering the RNA expression data

   R 1