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@morrislab

Morris Lab

Machine learning and adaptive algorithms for computational molecular biology

Popular repositories

  1. phylowgs phylowgs Public

    Application for inferring subclonal composition and evolution from whole-genome sequencing data.

    Python 106 54

  2. TrackSig TrackSig Public

    A framework to infer mutational signatures in cancer over time

    R 53 16

  3. qapa qapa Public

    RNA-seq Quantification of Alternative Polyadenylation

    Python 40 10

  4. pairtree pairtree Public

    Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneity. Pairtree focuses on scaling to many more cancer samples a…

    Python 33 10

  5. mlworkshop mlworkshop Public

    Machine learning workshop presented at GLBIO 2016

    Jupyter Notebook 11 2

  6. phylosub phylosub Public

    Python 10 11

Repositories

Showing 10 of 29 repositories
  • pairtree Public

    Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneity. Pairtree focuses on scaling to many more cancer samples and cancer cell subpopulations than other algorithms, and on producing concise and informative interactive characterizations of posterior uncertainty.

    Python 33 MIT 10 3 1 Updated Apr 18, 2024
  • orchard Public
    Python 2 MIT 0 0 0 Updated Jan 3, 2024
  • qapa Public

    RNA-seq Quantification of Alternative Polyadenylation

    Python 40 GPL-3.0 10 11 0 Updated Jun 16, 2023
  • GenomeTrackSig Public
    R 2 MIT 0 0 0 Updated May 5, 2023
  • TrackSigFreq Public

    R package for TrackSig and TrackSigFreq

    R 4 MIT 0 2 0 Updated Oct 31, 2022
  • RNAcompete_classifier Public

    This repository contains the code and data for training the RNAcompete experiment classifier used in Ray et al. 2022

    Python 1 0 0 0 Updated Oct 28, 2022
  • phylowgs Public

    Application for inferring subclonal composition and evolution from whole-genome sequencing data.

    Python 106 GPL-3.0 54 60 5 Updated Oct 12, 2022
  • PAN-cODE Public
    Jupyter Notebook 1 MIT 0 0 0 Updated Jul 20, 2022
  • mtor-rcc Public

    Analysis of TCGA/IMPACT datasets, and mTOR mutation status across cancer types

    R 0 1 0 0 Updated Apr 19, 2022
  • submarine Public

    Code for SubMARine.

    Python 8 GPL-3.0 1 1 0 Updated May 28, 2021
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