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Releases: monarch-initiative/MAxO

May 24 2024 Release

24 May 17:08
@LCCarmody LCCarmody
v2024-05-24
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May 24 2024 Release

May 2024 release

Updated the imports and CHEBI Slim to update all undefined terms.

Assets 2

Feb 2024 Release

05 Feb 20:28
@LCCarmody LCCarmody
v2024-02-05
0c635b5
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Feb 2024 Release Latest
Latest

Technical updates

  • Fix super class graph errors.
  • Update QC errors
  • Add automated release of maxoa file (from POET)

Ontology updates

  • Update small errors in diagnostic hierarchy.

  • Fix issues with anti-HIV agent therapy logical def.

Assets 2

December 2023 release

01 Dec 19:56
@LCCarmody LCCarmody
v2023-12-01
f74bff6
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December 2023 release

Updated typos

Replaced
hematopoietic cell count was replaced by blood cell count
added release step for maxoa (MAxO annotations) from POET
Updated
MAXO:0000479 orthopedic surgery
MAXO:0000024 surgical procedure on the eye
MAXO:0000946 nervous system surgical procedure
MAXO:0000012 surgery by site
MAXO:0025005 nasolacrimal duct surgery
MAXO:0000424 magnetic resonance imaging

added
MAXO:0010131 tongue swab collection
MAXO:0001505 gross motor therapy
MAXO:0001516 fine motor therapy
MAXO:0001477 orchiopexy
MAXO:0001472 fundoplication
MAXO:0001395 radiofrequency ablation
MAXO:0001513 skin surgery
MAXO:0001503 digestive system surgery
MAXO:0001504 alimentary part of gastrointestinal system surgery
MAXO:0025001 cardiovascular system surgery
MAXO:0001506 circulatory system surgery
MAXO:0001507 musculoskeletal system
MAXO:0001508 genitourinary system surgery
MAXO:0001510 pancreatic system surgery
MAXO:0001511 renal collecting system surgery
MAXO:0001512 reproductive system surgery
MAXO:0001514 vascular system surgery
MAXO:0001515 skeletal system surgery

Assets 2

October 2023 Release

03 Oct 20:31
@LCCarmody LCCarmody
v2023-10-03
aa2d0d7
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October 2023 Release

October 2023 Release

Technical changes

  • Update ODK to 1.4.3

  • Update FOODON imports

  • Update DOSDP files

Curation updates

Several minor updates have been made and a few terms. The only major change is that that created_by label was updated to dcterms:creator to be more consistent with OBO ontologies.

Changed or added

  • Make preventive therapy singular
  • Add adrenal hormone replacement therapy
  • add adrenal hormone stimulating therapy
  • add adrenal hormone suppressant therapy
  • add prodrug therapy
  • add neuroprotective agent therapy
  • add orphan drug therapy
  • add hppd inhibitor therapy
  • add tyrosine metabolism inhibitor therapy
Assets 2

June 2023 Release

06 Jun 22:03
@LCCarmody LCCarmody
v2023-06-06
00d5c18
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June 2023 Release

Adding ROBOT terms

MAXO ID MAXO label
MAXO:0035121 electrooculogram procedure
MAXO:0035120 cardiac auscultation
MAXO:0035119 duplex ultrasound with color flow imaging
MAXO:0035118 cardiac catheterization
MAXO:0035115 diffusion weighted cerebral MRI
MAXO:0035114 immune cell function assay
MAXO:0035113 platelet transmission electron microscopy
MAXO:0035054 protein glycosylation assay
MAXO:0035110 gustatory testing
MAXO:0035109 immune complex assay
MAXO:0035108 sweat electrolyte test
MAXO:0035106 paracentesis
MAXO:0035105 salivary cortisol test
MAXO:0035104 motor evoked potential evaluation
MAXO:0035103 refraction test
MAXO:0035102 water deprivation test
MAXO:0035101 phrenic nerve stimulation test
MAXO:0035099 electroretinogram procedure
MAXO:0035096 breath hydrogen test
MAXO:0035094 platelet aggregation assay
MAXO:0035093 erythrocyte sedimentation rate measurement
MAXO:0035092 fractional excretion assessment
MAXO:0035091 electromyography procedure
MAXO:0035084 fructose tolerance test
MAXO:0035083 CT urogram
MAXO:0035080 apoptosis assay
MAXO:0035079 neonatologist evaluation
MAXO:0035078 pulmonary function testing
MAXO:0035077 functional T cell assessment
MAXO:0035076 complement assay
MAXO:0035068 natural killer cell function test
MAXO:0035067 perchlorate discharge test
MAXO:0035066 somatosensory evoked potential assessment
MAXO:0035065 dentist evaluation
MAXO:0035064 electron microscopic study
MAXO:0035063 jerk-locked averaging
MAXO:0035058 hormone measurement
MAXO:0035062 urine hormone measurement
MAXO:0035059 nerve conduction study
MAXO:0035057 reproductive endocrinologist assessment
MAXO:0035055 flow cytometry procedure
MAXO:0035040 abdominal paracentesis
MAXO:0035025 in vitro DNA repair study
MAXO:0035028 L-selectin shedding study
MAXO:0035036 blood culture procedure
MAXO:0035017 hair microscopy
MAXO:0035005 circulating hormone measurement
MAXO:0035027 blood gas assessment in umbilical cord blood
MAXO:0035011 enzyme activity assessment
MAXO:0035026 circulating immunoglobulin measurement
MAXO:0035029 cerebrospinal fluid metabolite measurement
MAXO:0035019 erythrocyte enzyme activity assessment
MAXO:0035018 leukocyte enzyme activity assessment
MAXO:0035020 tissue enzyme activity assessment
MAXO:0035047 stool metabolite measurement
MAXO:0035031 stool xenobiotic measurement
MAXO:0035023 tissue metabolite measurement
MAXO:0035032 gastric fluid xenobiotic measurement
MAXO:0035033 hair xenobiotic measurement
MAXO:0035117 cardiac exercise stress test
MAXO:0035090 hepatobiliary iminodiacetic acid scan
MAXO:0035097 visual evoked potential procedure
MAXO:0035075 sperm analysis
MAXO:0035069 dysmorphology assessment
MAXO:0035024 high-resolution pulmonary computed tomography
MAXO:0035030 gastrointestinal transit measurement
MAXO:0035046 esophageal manometry
MAXO:0035060 central motor conduction time study
MAXO:0035007 cerebrospinal fluid analysis
MAXO:0035009 examination by dentist
MAXO:0035010 examination by neonatologist
MAXO:0035012 perimetry examination
MAXO:0035015 visual acuity assessment
MAXO:0035041 neurodevelopmental assessment
MAXO:0035122 cell function assay
MAXO:0001478 fetal MRI
MAXO:0001479 allogeneic hematopoietic stem cell transplantation
MAXO:0001480 immunoglobulin infusion therapy
MAXO:0001481 IgE-targeting biologic therapy
MAXO:0001482 Th2-targeting biologic therapy
MAXO:0001483 complement 5 inhibitor therapy
MAXO:0001484 gene editing therapy
MAXO:0001485 glutamine supplementation
MAXO:0001486 interferon alpha therapy
MAXO:0001487 interferon-gamma therapy
MAXO:0001488 interleukin-1 receptor inhibitor therapy
MAXO:0001489 live vaccine avoidance
MAXO:0001490 platelet transfusion
MAXO:0001491 somatostatin analog therapy
MAXO:0001492 surveillance for malignancies
MAXO:0001493 tumor necrosis factor inhibitor therapy
MAXO:0001494 ophthalmological diagnostic procedure
MAXO:0035021 iron-binding capacity assessment
MAXO:0035123 viral cell culture
MAXO:0001496 serotonin-norepinephrine reuptake inhibitor agent therapy avoidance
Assets 2

May 17 2023 Release

17 May 16:37
@LCCarmody LCCarmody
v2023-05-17
bc6132d
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May 17 2023 Release

Forgot to run the official release suggested on the previous day.

This release pushes all the info from May 16

Assets 2

May 16 2023 release

16 May 18:32
@LCCarmody LCCarmody
v2023-05-16
d4677a9
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May 16 2023 release

New pharmacotherapy terms added

MAxO ID MAxO label
MAXO:0001469 farnesyltransferase inhibitor agent therapy
MAXO:0001470 MMP inhibitor agent therapy
MAXO:0001474 thyroid hormone therapy
MAXO:0001475 sodium-glucose cotransporter-2 inhibitor therapy
MAXO:0001476 somatostatin recepter agonist therapy
MAXO:0001473 benzothiadiazine derivative therapy
MAXO:0001471 tazarotene agent therapy
Assets 2

May 2023 release

02 May 18:44
@LCCarmody LCCarmody
v2023-05-02
a4bece2
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May 2023 release

Quick release to fix a space in IRI

Assets 2

April 2023 release #2

18 Apr 19:13
@LCCarmody LCCarmody
v2023-04-18
fd451c0
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April 2023 release #2

Finishing up Maxolyzer terms

MAXO:0035024 | high-resolution pulmonary computed tomography
MAXO:0035030 | gastrointestinal transit measurement
MAXO:0035046 | esophageal manometry
MAXO:0035060 | central motor conduction time study
MAXO:0035007 | cerebrospinal fluid analysis
MAXO:0035009 | examination by dentist
MAXO:0035010 | examination by neonatologist
MAXO:0035012 | perimetry examination
MAXO:0035015 | visual acuity assessment
MAXO:0035016 | optical coherence tomography
MAXO:0035041 | neurodevelopmental assessment
MAXO:0035100 | applanation tonometry
MAXO:0035122 | cell function assay
MAXO:0035037 | gastroscopy
MAXO:0035042 | duodenoscopy
MAXO:0035044 | cardiac CT
MAXO:0035052 | hip radiography

Assets 2

April 2023 release

13 Apr 20:12
@LCCarmody LCCarmody
v2023-04-13
0c0cc95
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April 2023 release

Added new patterns and terms for diagnostic and therapeutic procedure by site

diagnostic procedure by site (MAXO:0000988)
diagnostic procedure of cardiovascular system (MAXO:0000493)
diagnostic procedure of digestive system (MAXO:0001396)
diagnostic procedure of circulatory system (MAXO:0001398)
diagnostic procedure of excretory system (MAXO:0001399)
diagnostic procedure of exocrine system (MAXO:0001400)
diagnostic procedure of genitourinary system (MAXO:0001401)
diagnostic procedure of hematopoietic system (MAXO:0001402)
diagnostic procedure of integumental system (MAXO:0001403)
diagnostic procedure of skin (MAXO:0001404)
diagnostic procedure of musculoskeletal system (MAXO:0001405)
diagnostic procedure of nervous system (MAXO:0001406)
diagnostic procedure of reproductive system (MAXO:0001407)
diagnostic procedure of respiratory system (MAXO:0001408)
diagnostic procedure of visual system (MAXO:0001444)
diagnostic procedure of auditory system (MAXO:0001445)
diagnostic procedure of immune system (MAXO:0001446)
diagnostic procedure of body substance (MAXO:0001447)
diagnostic procedure of amniotic fluid (MAXO:0001448)
diagnostic procedure of blood clot (MAXO:0001449)
diagnostic procedure of excreted substance (MAXO:0001450)
diagnostic procedure of feces (MAXO:0001451)
diagnostic procedure of urine (MAXO:0001452)
diagnostic procedure of interstitial fluid (MAXO:0001453)
diagnostic procedure of ocular refractive media (MAXO:0001454)
diagnostic procedure of aqueous humor of eyeball (MAXO:0001455)
diagnostic procedure of vitreous humor (MAXO:0001456)
diagnostic procedure of pus (MAXO:0001457)
diagnostic procedure of reproductive gland secretion (MAXO:0001458)
diagnostic procedure of female reproductive gland secretion (MAXO:0001459)
diagnostic procedure of male reproductive gland secretion (MAXO:0001460)
diagnostic procedure of respiratory system fluid/secretion (MAXO:0001461)
diagnostic procedure of sputum (MAXO:0001462)
diagnostic procedure of exocrine gland secretion (MAXO:0001463)
diagnostic procedure of bile (MAXO:0001464)
diagnostic procedure of gastric juice (MAXO:0001465)
diagnostic procedure of semen (MAXO:0001466)
diagnostic procedure of organ (MAXO:0001467)
therapeutic procedure by site (MAXO:0000034)
therapeutic procedure of visual system (MAXO:0001397)
therapeutic procedure of digestive system (MAXO:0001409)
therapeutic procedure of cardiovascular system (MAXO:0001410)
therapeutic procedure of circulatory system (MAXO:0001411)
therapeutic procedure of excretory system (MAXO:0001412)
therapeutic procedure of exocrine system (MAXO:0001413)
therapeutic procedure of genitourinary system (MAXO:0001414)
therapeutic procedure of hematopoietic system (MAXO:0001415)
therapeutic procedure of integumental system (MAXO:0001416)
therapeutic procedure of skin of body (MAXO:0001417)
therapeutic procedure of musculoskeletal system (MAXO:0001418)
therapeutic procedure of nervous system (MAXO:0001419)
therapeutic procedure of reproductive system (MAXO:0001420)
therapeutic procedure of respiratory system (MAXO:0001421)
therapeutic procedure of vestibulo-auditory system (MAXO:0001422)
therapeutic procedure of immune system (MAXO:0001423)
therapeutic procedure of organism substance (MAXO:0001424)
therapeutic procedure of amniotic fluid (MAXO:0001425)
therapeutic procedure of blood clot (MAXO:0001426)
therapeutic procedure of excreta (MAXO:0001427)
therapeutic procedure of feces (MAXO:0001428)
therapeutic procedure of urine (MAXO:0001429)
therapeutic procedure of interstitial fluid (MAXO:0001430)
therapeutic procedure of ocular refractive media (MAXO:0001431)
therapeutic procedure of aqueous humor of eyeball (MAXO:0001432)
therapeutic procedure of vitreous humor (MAXO:0001433)
therapeutic procedure of pus (MAXO:0001434)
therapeutic procedure of reproductive gland secretion (MAXO:0001435)
therapeutic procedure of female reproductive gland secretion (MAXO:0001436)
therapeutic procedure of male reproductive gland secretion (MAXO:0001437)
therapeutic procedure of respiratory system fluid/secretion (MAXO:0001438)
therapeutic procedure of sputum (MAXO:0001439)
therapeutic procedure of secretion of exocrine gland (MAXO:0001440)
therapeutic procedure of bile (MAXO:0001441)
therapeutic procedure of gastric juice (MAXO:0001442)
therapeutic procedure of organ (MAXO:0001443)
New Maxolyzer terms

MAXO:0035121 | electrooculogram procedure
MAXO:0035120 | cardiac auscultation
MAXO:0035119 | duplex ultrasound with color flow imaging
MAXO:0035118 | cardiac catheterization
MAXO:0035115 | diffusion weighted cerebral MRI
MAXO:0035114 | immune cell function assay
MAXO:0035113 | platelet transmission electron microscopy
MAXO:0035054 | protein glycosylation assay
MAXO:0035110 | gustatory testing
MAXO:0035109 | immune complex assay
MAXO:0035108 | sweat electrolyte test
MAXO:0035106 | paracentesis
MAXO:0035105 | salivary cortisol test
MAXO:0035104 | motor evoked potential evaluation
MAXO:0035103 | refraction test
MAXO:0035102 | water deprivation test
MAXO:0035101 | phrenic nerve stimulation test
MAXO:0035099 | electroretinogram procedure
MAXO:0035096 | breath hydrogen test
MAXO:0035094 | platelet aggregation assay
MAXO:0035093 | erythrocyte sedimentation rate measurement
MAXO:0035092 | fractional excretion assessment
MAXO:0035091 | electromyography procedure
MAXO:0035084 | fructose tolerance test
MAXO:0035083 | CT urogram
MAXO:0035080 | apoptosis assay
MAXO:0035079 | neonatologist evaluation
MAXO:0035078 | pulmonary function testing
MAXO:0035077 | functional T cell assessment
MAXO:0035076 | complement assay
MAXO:0035068 | natural killer cell function test
MAXO:0035067 | perchlorate discharge test
MAXO:0035066 | somatosensory evoked potential assessment
MAXO:0035065 | dentist evaluation
MAXO:0035064 | electron microscopic study
MAXO:0035063 | jerk-locked averaging
MAXO:0035058 | hormone measurement
MAXO:0035062 | urine hormone measurement
MAXO:0035059 | nerve conduction study
MAXO:0035057 | reproductive endocrinologist assessment
MAXO:0035055 | flow cytometry procedure
MAXO:0035040 | abdominal paracentesis
MAXO:0035025 | in vitro DNA repair study
MAXO:0035028 | L-selectin shedding study
MAXO:0035036 | blood culture procedure
MAXO:0035017 | hair microscopy
MAXO:0035005 | circulating hormone measurement
MAXO:0035027 | blood gas assessment in umbilical cord blood
MAXO:0035011 | enzyme activity assessment
MAXO:0035026 | circulating immunoglobulin measurement
MAXO:0035029 | cerebrospinal fluid metabolite measurement
MAXO:0035019 | erythrocyte enzyme activity assessment
MAXO:0035018 | leukocyte enzyme activity assessment
MAXO:0035020 | tissue enzyme activity assessment
MAXO:0035047 | stool metabolite measurement
MAXO:0035031 | stool xenobiotic measurement
MAXO:0035023 | tissue metabolite measurement
MAXO:0035032 | gastric fluid xenobiotic measurement
MAXO:0035033 | hair xenobiotic measurement
MAXO:0035117 | cardiac exercise stress test
MAXO:0035090 | hepatobiliary iminodiacetic acid scan
MAXO:0035097 | visual evoked potential procedure
MAXO:0035075 | sperm analysis
MAXO:0035069 | dysmorphology assessment
MAXO:0035107 biopsy of carotid artery
MAXO:0035095 venography procedure
MAXO:0035089 nasal endoscopy
MAXO:0035071 reactive oxygen species measurement
MAXO:0035061 pelvic CT

Added
body measurement (MAXO:0001011)
body shape assessment (MAXO:0000997)
head morphology assessment (MAXO:0000999)
facial morphology assessment (MAXO:0000998)
facial morphology assessment by type (MAXO:0001028)
3D facial analysis (MAXO:0001090)
waist measurement (MAXO:0001012)
hip measurement (MAXO:0001013)
waist to hip ratio calculation (MAXO:0001024)
therapy
occupational therapy
feeding therapy
applied behavioral analysis therapy

Assets 2