FloPy optional dependency testing #260
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # This workflow tests flopy with random subsets of optional dependencies. | |
| # Flopy should not crash due to the absence of any optional dependencies, | |
| # rather it should gracefully raise an ImportError if absent when needed. | |
| name: FloPy optional dependency testing | |
| on: | |
| schedule: | |
| - cron: '0 8 * * *' # run at 8 AM UTC (12 am PST) | |
| jobs: | |
| test: | |
| name: Test | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash | |
| timeout-minutes: 10 | |
| env: | |
| PYTHON_VERSION: 3.8 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| optdeps: | |
| # - "all optional dependencies" | |
| - "no optional dependencies" | |
| - "some optional dependencies" | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v4 | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ env.PYTHON_VERSION }} | |
| cache: 'pip' | |
| cache-dependency-path: pyproject.toml | |
| - name: Install Python dependencies | |
| run: | | |
| pip install --upgrade pip | |
| pip install . | |
| pip install ".[test]" | |
| # Install optional dependencies according to matrix.optdeps. | |
| # If matrix.optdeps is "some" remove 3 optional dependencies | |
| # selected randomly using the current date as the seed. | |
| if [[ ! "${{ matrix.optdeps }}" == *"no"* ]]; then | |
| pip install ".[optional]" | |
| fi | |
| if [[ "${{ matrix.optdeps }}" == *"some"* ]]; then | |
| deps=$(sed '/optional =/,/]/!d' pyproject.toml | sed -e '1d;$d' -e 's/\"//g' -e 's/,//g' | tr -d ' ' | cut -f 1 -d ';') | |
| rmvd=$(echo $deps | tr ' ' '\n' | shuf --random-source <(yes date +%d.%m.%y) | head -n 3) | |
| echo "Removing optional dependencies: $rmvd" >> removed_dependencies.txt | |
| cat removed_dependencies.txt | |
| pip uninstall --yes $rmvd | |
| fi | |
| - name: Upload removed dependencies log | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: smoke-test-removed-dependencies | |
| path: ./removed_dependencies.txt | |
| - name: Install Modflow executables | |
| uses: modflowpy/install-modflow-action@v1 | |
| - name: Smoke test (${{ matrix.optdeps }}) | |
| working-directory: autotest | |
| run: pytest -v -n=auto -m "not regression and not example" --cov=flopy --cov-report=xml --durations=0 --keep-failed=.failed | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Upload failed test outputs | |
| uses: actions/upload-artifact@v4 | |
| if: failure() | |
| with: | |
| name: failed-smoke-${{ runner.os }}-${{ env.PYTHON_VERSION }} | |
| path: ./autotest/.failed/** | |