BIDS app that reads raw files from a BIDS compatible dataset and converts it into evoked objects using MNE.

Pre-installation

You will need Docker installed: https://www.docker.com/

Quickstart

BIDS compatible data for this example is available at: https://openneuro.org/datasets/ds000248/. Place it inside the folder BIDS-examples/

First, build the docker image

$ docker build . -t mne-app

Then make the folder to save the outputs

$ mkdir outputs/

Run the BIDS app

$ docker run -ti -v $(pwd)/BIDS-examples/ds000248:/bids_dataset -v $(pwd)/outputs:/outputs mne-app --subject_id 01 --inputdir /bids_dataset --outputdir /outputs