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raphael-group/hatchet
raphael-group/hatchet PublicHATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jointly across multiple tumor samples from the same patient, a…
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raphael-group/calder
raphael-group/calder PublicCALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk DNA sequencing data
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raphael-group/SBMClone
raphael-group/SBMClone PublicSBMClone, a method for recovering tumor clonal composition from sparse single-cell mutation data
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