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  1. raphael-group/hatchet raphael-group/hatchet Public

    HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jointly across multiple tumor samples from the same patient, a…

    Roff 56 28

  2. raphael-group/calder raphael-group/calder Public

    CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk DNA sequencing data

    Java 14 1

  3. raphael-group/SBMClone raphael-group/SBMClone Public

    SBMClone, a method for recovering tumor clonal composition from sparse single-cell mutation data

    Python 8 2

  4. raphael-group/Absence-Aware-Clustering raphael-group/Absence-Aware-Clustering Public

    Python 1 1