Bump the pip group across 4 directories with 3 updates

[dependabot]

Bumps the pip group with 1 update in the /examples/ChestXRay/metrics/project directory: scikit-learn.
Bumps the pip group with 1 update in the /examples/SurgMLCube/surg_metrics/project directory: scikit-learn.
Bumps the pip group with 1 update in the /examples/chestxray_tutorial/data_preparator/project directory: pillow.
Bumps the pip group with 1 update in the /server directory: gunicorn.

Updates scikit-learn from 0.24.2 to 1.0.1

Release notes

Sourced from scikit-learn's releases.

scikit-learn 1.0.1

We're happy to announce the 1.0.1 release with several bugfixes:

You can see the changelog here: https://scikit-learn.org/dev/whats_new/v1.0.html#version-1-0-1

You can upgrade with pip as usual:

pip install -U scikit-learn

The conda-forge builds will be available shortly, which you can then install using:

conda install -c conda-forge scikit-learn

scikit-learn 1.0

We're happy to announce the 1.0 release. You can read the release highlights under https://scikit-learn.org/stable/auto_examples/release_highlights/plot_release_highlights_1_0_0.html and the long version of the change log under https://scikit-learn.org/stable/whats_new/v1.0.html#changes-1-0

This version supports Python versions 3.7 to 3.9.

Commits

• 0d37891 Trigger wheel builder workflow: [cd build]
• 7737cb9 DOC update the News section in website (#21417)
• 8971a19 DOC Ensures that MultiTaskElasticNetCV passes numpydoc validation (#21405)
• d6e24ee DOC Ensures that LabelSpreading passes numpydoc validation (#21414)
• 14fda2f DOC Ensures that PassiveAggressiveRegressor passes numpydoc validation (#21413)
• 112ae4e DOC Ensures that OrthogonalMatchingPursuitCV passes numpydoc validation (#21412)
• cd927c0 FIX delete feature_names_in_ when refitting on a ndarray (#21389)
• ae223ee bumpversion to 1.0.1
• 9227162 MNT remove 1.1 changelog due to rebase conflict
• 5d75547 MNT fix changelog 1.0.1 (#21416)
• Additional commits viewable in compare view

Updates scikit-learn from 0.24.2 to 1.0.1

Release notes

Sourced from scikit-learn's releases.

scikit-learn 1.0.1

We're happy to announce the 1.0.1 release with several bugfixes:

You can see the changelog here: https://scikit-learn.org/dev/whats_new/v1.0.html#version-1-0-1

You can upgrade with pip as usual:

pip install -U scikit-learn

The conda-forge builds will be available shortly, which you can then install using:

conda install -c conda-forge scikit-learn

scikit-learn 1.0

We're happy to announce the 1.0 release. You can read the release highlights under https://scikit-learn.org/stable/auto_examples/release_highlights/plot_release_highlights_1_0_0.html and the long version of the change log under https://scikit-learn.org/stable/whats_new/v1.0.html#changes-1-0

This version supports Python versions 3.7 to 3.9.

Commits

• 0d37891 Trigger wheel builder workflow: [cd build]
• 7737cb9 DOC update the News section in website (#21417)
• 8971a19 DOC Ensures that MultiTaskElasticNetCV passes numpydoc validation (#21405)
• d6e24ee DOC Ensures that LabelSpreading passes numpydoc validation (#21414)
• 14fda2f DOC Ensures that PassiveAggressiveRegressor passes numpydoc validation (#21413)
• 112ae4e DOC Ensures that OrthogonalMatchingPursuitCV passes numpydoc validation (#21412)
• cd927c0 FIX delete feature_names_in_ when refitting on a ndarray (#21389)
• ae223ee bumpversion to 1.0.1
• 9227162 MNT remove 1.1 changelog due to rebase conflict
• 5d75547 MNT fix changelog 1.0.1 (#21416)
• Additional commits viewable in compare view

Updates pillow from 9.5.0 to 10.3.0

Release notes

Sourced from pillow's releases.

10.3.0

https://pillow.readthedocs.io/en/stable/releasenotes/10.3.0.html

Changes

• CVE-2024-28219: Use strncpy to avoid buffer overflow #7928 [@​hugovk]
• Use functools.lru_cache for hopper() #7912 [@​hugovk]
• Raise ValueError if seeking to greater than offset-sized integer in TIFF #7883 [@​radarhere]
• Improve speed of loading QOI images #7925 [@​radarhere]
• Added RGB to I;16N conversion #7920 [@​radarhere]
• Add --report argument to main.py to omit supported formats #7818 [@​nulano]
• Added RGB to I;16, I;16L and I;16B conversion #7918 [@​radarhere]
• Fix editable installation with custom build backend and configuration options #7658 [@​nulano]
• Fix putdata() for I;16N on big-endian #7209 [@​Yay295]
• Determine MPO size from markers, not EXIF data #7884 [@​radarhere]
• Improved conversion from RGB to RGBa, LA and La #7888 [@​radarhere]
• Support FITS images with GZIP_1 compression #7894 [@​radarhere]
• Use I;16 mode for 9-bit JPEG 2000 images #7900 [@​scaramallion]
• Raise ValueError if kmeans is negative #7891 [@​radarhere]
• Remove TIFF tag OSUBFILETYPE when saving using libtiff #7893 [@​radarhere]
• Raise ValueError for negative values when loading P1-P3 PPM images #7882 [@​radarhere]
• Added reading of JPEG2000 palettes #7870 [@​radarhere]
• Added alpha_quality argument when saving WebP images #7872 [@​radarhere]
• Fixed joined corners for ImageDraw rounded_rectangle() non-integer dimensions #7881 [@​radarhere]
• Removed Python and NumPy pinning on Cygwin #7880 [@​radarhere]
• Update UnidentifiedImageError and version imports #7644 [@​radarhere]
• Stop reading EPS image at EOF marker #7753 [@​radarhere]
• PSD layer co-ordinates may be negative #7706 [@​radarhere]
• Use subprocess with CREATE_NO_WINDOW flag in ImageShow WindowsViewer #7791 [@​radarhere]
• When saving GIF frame that restores to background color, do not fill identical pixels #7788 [@​radarhere]
• Fixed reading PNG iCCP compression method #7823 [@​radarhere]
• Allow writing IFDRational to UNDEFINED tag #7840 [@​radarhere]
• Fix logged tag name when loading Exif data #7842 [@​radarhere]
• Use maximum frame size in IHDR chunk when saving APNG images #7821 [@​radarhere]
• Prevent opening P TGA images without a palette #7797 [@​radarhere]
• Use palette when loading ICO images #7798 [@​radarhere]
• Use consistent arguments for load_read and load_seek #7713 [@​radarhere]
• Turn off nullability warnings for macOS SDK #7827 [@​radarhere]
• Fix shift-sign issue in Convert.c #7838 [@​r-barnes]
• winbuild: Refactor dependency versions into constants #7843 [@​hugovk]
• Build macOS arm64 wheels natively #7852 [@​radarhere]
• Fixed typo #7855 [@​radarhere]
• Open 16-bit grayscale PNGs as I;16 #7849 [@​radarhere]
• Handle truncated chunks at the end of PNG images #7709 [@​lajiyuan]
• Match mask size to pasted image size in GifImagePlugin #7779 [@​radarhere]
• Changed SupportsGetMesh protocol to be public #7841 [@​radarhere]
• Release GIL while calling WebPAnimDecoderGetNext #7782 [@​evanmiller]
• Fixed reading FLI/FLC images with a prefix chunk #7804 [@​twolife]
• Updated package name for Tidelift #7810 [@​radarhere]
• Removed unused code #7744 [@​radarhere]

... (truncated)

Changelog

Sourced from pillow's changelog.

10.3.0 (2024-04-01)

• CVE-2024-28219: Use strncpy to avoid buffer overflow #7928 [radarhere, hugovk]

• Deprecate eval(), replacing it with lambda_eval() and unsafe_eval() #7927 [radarhere, hugovk]

• Raise ValueError if seeking to greater than offset-sized integer in TIFF #7883 [radarhere]

• Add --report argument to __main__.py to omit supported formats #7818 [nulano, radarhere, hugovk]

• Added RGB to I;16, I;16L, I;16B and I;16N conversion #7918, #7920 [radarhere]

• Fix editable installation with custom build backend and configuration options #7658 [nulano, radarhere]

• Fix putdata() for I;16N on big-endian #7209 [Yay295, hugovk, radarhere]

• Determine MPO size from markers, not EXIF data #7884 [radarhere]

• Improved conversion from RGB to RGBa, LA and La #7888 [radarhere]

• Support FITS images with GZIP_1 compression #7894 [radarhere]

• Use I;16 mode for 9-bit JPEG 2000 images #7900 [scaramallion, radarhere]

• Raise ValueError if kmeans is negative #7891 [radarhere]

• Remove TIFF tag OSUBFILETYPE when saving using libtiff #7893 [radarhere]

• Raise ValueError for negative values when loading P1-P3 PPM images #7882 [radarhere]

• Added reading of JPEG2000 palettes #7870 [radarhere]

• Added alpha_quality argument when saving WebP images #7872 [radarhere]

... (truncated)

Commits

• 5c89d88 10.3.0 version bump
• 63cbfcf Update CHANGES.rst [ci skip]
• 2776126 Merge pull request #7928 from python-pillow/lcms
• aeb51cb Merge branch 'main' into lcms
• 5beb0b6 Update CHANGES.rst [ci skip]
• cac6ffa Merge pull request #7927 from python-pillow/imagemath
• f5eeeac Name as 'options' in lambda_eval and unsafe_eval, but '_dict' in deprecated eval
• facf3af Added release notes
• 2a93aba Use strncpy to avoid buffer overflow
• a670597 Update CHANGES.rst [ci skip]
• Additional commits viewable in compare view

Updates gunicorn from 21.2.0 to 22.0.0

Release notes

Sourced from gunicorn's releases.

Gunicorn 22.0 has been released

Gunicorn 22.0.0 has been released. This version fix the numerous security vulnerabilities. You're invited to upgrade asap your own installation.

Changes:

22.0.0 - 2024-04-17
===================

use utime to notify workers liveness
migrate setup to pyproject.toml
fix numerous security vulnerabilities in HTTP parser (closing some request smuggling vectors)
parsing additional requests is no longer attempted past unsupported request framing
on HTTP versions < 1.1 support for chunked transfer is refused (only used in exploits)
requests conflicting configured or passed SCRIPT_NAME now produce a verbose error
Trailer fields are no longer inspected for headers indicating secure scheme
support Python 3.12

** Breaking changes **

minimum version is Python 3.7
the limitations on valid characters in the HTTP method have been bounded to Internet Standards
requests specifying unsupported transfer coding (order) are refused by default (rare)
HTTP methods are no longer casefolded by default (IANA method registry contains none affected)
HTTP methods containing the number sign (#) are no longer accepted by default (rare)
HTTP versions < 1.0 or >= 2.0 are no longer accepted by default (rare, only HTTP/1.1 is supported)
HTTP versions consisting of multiple digits or containing a prefix/suffix are no longer accepted
HTTP header field names Gunicorn cannot safely map to variables are silently dropped, as in other software
HTTP headers with empty field name are refused by default (no legitimate use cases, used in exploits)
requests with both Transfer-Encoding and Content-Length are refused by default (such a message might indicate an attempt to perform request smuggling)
empty transfer codings are no longer permitted (reportedly seen with really old & broken proxies)

** SECURITY **

fix CVE-2024-1135

1. Documentation is available there: https://docs.gunicorn.org/en/stable/news.html
2. Packages: https://pypi.org/project/gunicorn/

Commits

• f63d59e bump to 22.0
• 4ac81e0 Merge pull request #3175 from e-kwsm/typo
• 401cecf Merge pull request #3179 from dhdaines/exclude-eventlet-0360
• 0243ec3 fix(deps): exclude eventlet 0.36.0
• 628a0bc chore: fix typos
• 88fc4a4 Merge pull request #3131 from pajod/patch-py12-rebased
• deae2fc CI: back off the agressive timeout
• f470382 docs: promise 3.12 compat
• 5e30bfa add changelog to project.urls (updated for PEP621)
• 481c3f9 remove setup.cfg - overridden by pyproject.toml
• Additional commits viewable in compare view

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