Automated Neuron Reconstruction from 3D Fluorescence Microscopy Images Using Sequential Monte Carlo Estimation

https://doi.org/10.1007/s12021-018-9407-8

Repository consists of c++/vaa3d source code of the software implementation accompanying the publication.

Summary

• Advantra source code (Advantra plugin of the BigNeuron submission)
• Probabilistic Neuron Reconstructor (PNR) a complete rework of the Advantra

Synthetic images

https://drive.proton.me/urls/ZK2R10K8F8#mmNBTgS7y9dl

Usage

Example Advantra command:

vaa3d64 -x Advantra -f advantra_func -i image.tif -p 2,4,6 0 5 0.3 3 2 200 20 2 4 1

Contact

miroslav.radojevic@gmail.com