R package to estimate mortality with SOFA, qSOFA, and APACHEII scores.
- APACHEII_missingness
- APACHEII_mortality
- APACHEII_points
- SOFA_missingness
- SOFA_mortality
- SOFA_points
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APACHEII_points: takes a dataframe with critical care variables named by the Grady Memorial Hospital COVID chart review data dictionary and produces a dataframe with record_id and points for each component of the APACHEII score.
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APACHEII_missingness: takes APACHEII_points output as input dataframe and calculates number and percent missing by variable, including APACHEII score.
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APACHEII_mortality: takes APACHEII_points output table as input dataframe and calculates estimated in-hospital mortality by operative status. Output is a dataframe with record_id, post-operative status, and non-operative status mortality predictions.
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SOFA_points: takes a dataframe with critical care variables named by the Grady Memorial Hospital COVID chart review data dictionary and produces a dataframe with record_id and points for each component of the SOFA & qSOFA scores.
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SOFA_missingness: takes SOFA_points output table as input dataframe and calculates number and percent missing by variable, including APACHEII score.
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SOFA_mortality: takes SOFA_points output table as input dataframe and calculates estimated in-hospital mortality by operative status. Output is a dataframe with record_id, SOFA & qSOFA mortality predictions.