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@mdcatapult

Medicines Discovery Catapult

Multidisciplinary expertise in Bioinformatics, Cheminformatics, Bioimaging informatics, Machine Learning, Natural Language Processing and Software Engineering

Popular repositories

  1. json-combiner json-combiner Public

    Utility to scan and parse files by format and convert them into json output that can be ingested by mongoimport, Currently supports parsing of json and xml formats

    Scala 1

  2. image-model-runner image-model-runner Public

    Python 1

  3. aurac-web-plugin aurac-web-plugin Public

    Browser plugin that can find, highlight and link to interesting life science things in web pages and PDFs.

    TypeScript 1

  4. deepfigures-open deepfigures-open Public

    Forked from allenai/deepfigures-open

    Companion code to the paper "Extracting Scientific Figures with Distantly Supervised Neural Networks" 🤖

    Python

  5. xml-splitter xml-splitter Public

    Go

  6. biobert biobert Public

    Forked from dmis-lab/biobert

    BioBERT: a pre-trained biomedical language representation model for biomedical text mining

    Python

Repositories

Showing 10 of 25 repositories
  • py-mongo Public

    Wrapper for pymongo to allow simple instantiation of MongoDB from configuration.

    Python 0 Apache-2.0 0 0 0 Updated May 22, 2024
  • py-queue Public

    Module to abstract queues. Currently implements RabbitMQ.

    Python 0 Apache-2.0 0 0 0 Updated Apr 26, 2024
  • scala-queue Public

    Use Scala & Pekko to send and receive typed messages with RabbitMQ

    Scala 0 Apache-2.0 0 0 0 Updated Apr 17, 2024
  • py-config Public

    Python lib that allows environment variables to override hocon style yaml or json config

    Python 0 Apache-2.0 1 0 0 Updated Feb 14, 2024
  • py-postgres Public

    Methods to simplify configuring and connecting to Postgresql databases

    Python 0 Apache-2.0 0 0 0 Updated Oct 27, 2022
  • aurac-web-plugin Public

    Browser plugin that can find, highlight and link to interesting life science things in web pages and PDFs.

    TypeScript 1 Apache-2.0 0 0 0 Updated Sep 27, 2022
  • PDF-Converter Public

    Webservice to convert PDFs to HTML

    JavaScript 0 Apache-2.0 0 0 0 Updated Sep 27, 2022
  • viawebgl Public

    MDC clone of viawebgl

    JavaScript 0 MIT 0 0 0 Updated Sep 16, 2022
  • openseadragon Public

    MDC clone of openseadragon

    JavaScript 0 BSD-3-Clause 0 0 0 Updated Sep 16, 2022
  • bio-aurac Public

    Coordinating repository allowing users to run the bio-aurac application.

    JavaScript 0 Apache-2.0 0 0 0 Updated Aug 11, 2022
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