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VCFSleuth-Workflow

basicVCF2TSVConversion.sh

Written in bash, the basic script simply uses the vcf2tsv software to make a tsv of the vcf including all columns. It also makes another tsv with a line for each sample the record was seen in.

VCF2TSVWorkflow.sh

Written in bash, my workflow script does a similar thing except that it does some post processing. The vcf perSample is subset for our labs usual columns of interest and samples/rows are filtered out if they are not carriers of the alternate allele.

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Built around the vcf2tsv software. Make a tsv from a vcf for the excel lovers in your life.

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