Merge branch 'master' into otfvis-module-protection-hint

.github/workflows/code-coverage.yaml

@@ -17,7 +17,7 @@ jobs:
       - name: Setup Java
         uses: actions/setup-java@v4
         with:
-          java-version: 17
+          java-version: 21
           distribution: 'zulu'
           cache: 'maven'
 

.github/workflows/codeql.yml

@@ -21,7 +21,7 @@ jobs:
       - name: Setup Java
         uses: actions/setup-java@v4
         with:
-          java-version: 17
+          java-version: 21
           distribution: 'zulu'
           cache: 'maven'
 

.github/workflows/deploy-on-pr-merge.yaml

@@ -22,7 +22,7 @@ jobs:
       - name: Setup Java
         uses: actions/setup-java@v4
         with:
-          java-version: 17
+          java-version: 21
           distribution: 'zulu'
           cache: 'maven'
           server-id: 'matsim-releases'

.github/workflows/deploy-on-release-created.yaml

@@ -16,7 +16,7 @@ jobs:
       - name: Setup Java
         uses: actions/setup-java@v4
         with:
-          java-version: 17
+          java-version: 21
           distribution: 'zulu'
           cache: 'maven'
           server-id: matsim-releases

.github/workflows/deploy-weekly.yaml

@@ -17,7 +17,7 @@ jobs:
       - name: Setup Java
         uses: actions/setup-java@v4
         with:
-          java-version: 17
+          java-version: 21
           distribution: 'zulu'
           cache: 'maven'
           server-id: 'matsim-releases'

.github/workflows/full-integration.yaml

@@ -27,7 +27,7 @@ jobs:
       - name: Setup Java
         uses: actions/setup-java@v4
         with:
-          java-version: 17
+          java-version: 21
           distribution: 'zulu'
           cache: 'maven'
 

.github/workflows/verify-push.yaml

@@ -87,7 +87,7 @@ jobs:
         if: ${{matrix.module != 'matsim' || steps.detect-changes.outputs.outside-contribs == 'true'}}
         uses: actions/setup-java@v4
         with:
-          java-version: 17
+          java-version: 21
           distribution: 'zulu'
           cache: 'maven'
 

.gitignore

@@ -12,5 +12,8 @@ matsimExamples
 matsim/docs/doxygen/html
 matsim/src/main/java/Doxyfile
 
+# VS Code files
+.vscode
+
 # ignore output directories:
 output/

contribs/application/pom.xml

@@ -1,4 +1,5 @@
-<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+		 xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
 
 	<parent>
 		<groupId>org.matsim</groupId>
@@ -20,12 +21,21 @@
 		</repository>
 	</repositories>
 
+	<properties>
+		<avro.version>1.11.3</avro.version>
+	</properties>
+
 	<dependencies>
 
 		<dependency>
 			<groupId>tech.tablesaw</groupId>
 			<artifactId>tablesaw-core</artifactId>
 		</dependency>
+		<dependency>
+			<groupId>org.apache.avro</groupId>
+			<artifactId>avro</artifactId>
+			<version>${avro.version}</version>
+		</dependency>
 
 		<dependency>
 			<groupId>org.matsim.contrib</groupId>
@@ -107,7 +117,7 @@
 		<dependency>
 			<groupId>info.picocli</groupId>
 			<artifactId>picocli</artifactId>
-			<version>4.7.5</version>
+			<version>4.7.6</version>
 		</dependency>
 		<dependency>
 			<groupId>it.unimi.dsi</groupId>
@@ -140,4 +150,27 @@
 		</dependency>
 
 	</dependencies>
+
+	<build>
+		<plugins>
+			<plugin>
+				<groupId>org.apache.avro</groupId>
+				<artifactId>avro-maven-plugin</artifactId>
+				<version>${avro.version}</version>
+				<executions>
+					<execution>
+						<phase>generate-sources</phase>
+						<goals>
+							<goal>schema</goal>
+						</goals>
+						<configuration>
+							<sourceDirectory>${project.basedir}/src/main/avro/</sourceDirectory>
+							<outputDirectory>${project.basedir}/src/main/java/</outputDirectory>
+						</configuration>
+					</execution>
+				</executions>
+			</plugin>
+		</plugins>
+	</build>
+
 </project>

contribs/application/src/main/avro/xyt.avsc

@@ -0,0 +1,47 @@
+{
+  "namespace": "org.matsim.application.avro",
+  "type": "record",
+  "name": "XYTData",
+  "fields": [
+    {
+      "name": "crs",
+      "type": "string",
+      "doc": "Coordinate reference system"
+    },
+    {
+      "name": "xCoords",
+      "doc": "List of x coordinates",
+      "type": {
+        "type": "array",
+        "items": "float"
+      }
+    },
+    {
+      "name": "yCoords",
+      "doc": "List of y coordinates",
+      "type": {
+        "type": "array",
+        "items": "float"
+      }
+    },
+    {
+      "name": "timestamps",
+      "doc": "List of timestamps in seconds",
+      "type": {
+        "type": "array",
+        "items": "int"
+      }
+    },
+    {
+      "name": "data",
+      "doc": "XYT data for each dataset. The key is the name, the data is stored in one chunk of data.",
+      "type": {
+        "type": "map",
+        "values": {
+          "type": "array",
+          "items": "float"
+        }
+      }
+    }
+  ]
+}

contribs/application/src/main/java/org/matsim/application/analysis/emissions/AirPollutionAnalysis.java

@@ -142,6 +142,7 @@ private Config prepareConfig() {
 		config.transit().setTransitScheduleFile(ApplicationUtils.matchInput("transitSchedule", input.getRunDirectory()).toAbsolutePath().toString());
 		config.transit().setVehiclesFile(ApplicationUtils.matchInput("transitVehicles", input.getRunDirectory()).toAbsolutePath().toString());
 		config.plans().setInputFile(null);
+		config.facilities().setInputFile(null);
 		config.eventsManager().setNumberOfThreads(null);
 		config.eventsManager().setEstimatedNumberOfEvents(null);
 		config.global().setNumberOfThreads(1);
@@ -337,8 +338,8 @@ private void writeTimeDependentRaster(Network network, Config config, EmissionsO
 						Coord coord = raster.getCoordForIndex(xi, yi);
 						double value = timeBin.getValue().get(Pollutant.CO2_TOTAL).getValueByIndex(xi, yi);
 
-//						if (value == 0)
-//							continue;
+						if (value == 0)
+							continue;
 
 						printer.print(timeBin.getStartTime());
 						printer.print(coord.getX());