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Strains paper #97

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Strains paper #97

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rakow
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@rakow rakow commented Jun 3, 2022

Not for merge, only to see the differences.

rakow and others added 28 commits March 30, 2022 11:07
@rakow
Option to set infectiousness for run trial
e590cef
@rakow
cologne strain batch
15c40e8
@rakow
set snapshot prefix
30b2945
@rakow
calibration objective for strains
a2a2cc9
@smuellervsp
update disease import
a0502fe
@rakow
parameter for alpha offset, analysis script for strain calibration
1016f6b
@rakow
updated parameters
13bd1c0
@smuellervsp
change leisure correction period
5bea468
@smuellervsp
adapt for new cologne scenario
19a7c77
@rakow
fix clear after method for restrictions
cd7bbf5
@rakow
updated params
5cfe0aa
@rakow
partly reverted changes to RValuesFromEvents
90bed1f
@smuellervsp
update batch run for strain paper
5d7eed4
@rakow
store strain of infected persons
5bb9207
@rakow
check if person was already infected before assigning strain
94a678f
@rakow
read strains from initial infections
13055bc
@rakow
fix R per strain
1519bbb
@rakow
fix storing of correct strain from events
1aee97e
@rakow
better initial value for contagiousDay
8520079
@smuellervsp
configure vaccination model
a83e989
@smuellervsp
use DefaultDiseaseStatusTransitionModel
1d8d56d
@smuellervsp
switch on testing
9b224f8
@smuellervsp
changes for strain paper
ff9bcf9
@rakow
update python scripts
c490483
@rakow
handler to scale number of recovered persons
8bd0a15
@rakow
add comments
6ea04ba
@smuellervsp
calibration runs
03b93d2
@rakow
update vaccinations test
1c9b62b
@rakow rakow changed the base branch from master to develop June 3, 2022 11:49
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@rakow @smuellervsp