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  • UCT Prague, VMCF - Science Faculty of Charles University, Natinal Technical Library in Prague
  • Prague, Czech republic
  • X @SchatzCZ

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Achievement: Public SponsorAchievement: Pull Sharkx2Achievement: YOLOAchievement: Quickdraw
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martinschatz-cz/README.md
  • 👋 Hi, I’m Martin Schätz (@martinschatz-cz)
  • 👀 I’m interested in BioImage Analysis, signal and image processing and Open Science. I am curently working at University of Chemistry and Technology as Assistant Professor and in Open Access Microscopy core facility vmcf-konfmi, Science Faculty, Charles University. You can find more about my research on ORCID.
  • 🌱 I’m currently playing with Raspberry Pi 0 W, 3D Printing and I am learning how to properly use jupyter-book
  • 💞️ I’m looking to collaborate on any kind of BioImage Analysis problems, machine and deep learning validation for reproducibility and in general on any kind of framework for reproducible data science.
  • ✨ Check out my YOLOv5 based object detection and counting project focused on scientific images: SciCount
  • ✨ Check out my sugested sources, tools, lectures and more in BioImage Analysis overview.

If you are interested in BioImage Analysis I am starting small newsletter about BiA tools and events in Czech. You can join up here.

Pinned

  1. SciCount SciCount Public

    SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datasets.

    Jupyter Notebook 5

  2. SciAugment SciAugment Public

    SciAugment aims to provide tools for image augmentation based on machine on which images were taken.

    Jupyter Notebook 3 1

  3. ImageJ_Pneumonia_Estimation_Tool ImageJ_Pneumonia_Estimation_Tool Public

    ImageJ tool for estimation of pneumonia in CT images (of lungs)

    Jupyter Notebook 1

  4. the-segmentation-game the-segmentation-game Public

    Forked from haesleinhuepf/the-segmentation-game

    Gamified image segmentation quality estimation

    Python

  5. bia-overview bia-overview Public

    Jupyter-book repo for overview of my fav. sources and tools for BiA

    HTML 2

  6. genotoxicity-bia genotoxicity-bia Public

    Jupyter Notebook