Enhanced Image Stack Loading and Operation Handling for Flat-fielding Tests #2176
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| if frame_type in params: | ||
| filename_group = FilenameGroup.from_file(config_manager.load_sample) | ||
| filename_group.find_all_files() | ||
| filename_group.find_related(getattr(FILE_TYPES, frame_type.upper())) |
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related_filename_group = filename_group.find_related(getattr(FILE_TYPES, frame_type.upper()))
related_filename_group.find_all_files()
image_stack = loader.load(filename_group=related_filename_group)
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Running tests for Flat-fielding:
No related files found for dark_after
raise ValueError("selected_flat_fielding not in:", valid_methods)
ValueError: ('selected_flat_fielding not in:', ['Only Before', 'Only After', 'Both, concatenated'])
(mantidimaging-dev) PS C:\Users\44770\PycharmProjects\mantidimaging>
samtygier-stfc
requested changes
May 16, 2024
| if frame_type in params: | ||
| filename_group = FilenameGroup.from_file(config_manager.load_sample) | ||
| related_filename_group = filename_group.find_related(getattr(FILE_TYPES, frame_type.upper())) | ||
| related_filename_group.find_all_files() |
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I get AttributeError: 'NoneType' object has no attribute 'find_all_files, so looks like you need to check if related_filename_group is None (which will happen if it does not find that sort of related stack)
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The test dataset only has Flat_Before, Flat_After, Dark_Before
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Description
Conditional Loading: The load_image_stack function has been modified to conditionally load flat and dark images along with the main image stack if the test case is for "Flat-fielding".
FilenameGroup Integration: Utilizes FilenameGroup for managing file paths and ensuring that required files (e.g., log files, flat, and dark images) are correctly loaded.
Enhanced Parameter Handling: Parameters for the operations are dynamically updated to include loaded flats and darks which are essential for "Flat-fielding".
Testing
Flat-fielding with Complete Data: All required flats and darks are specified and available. The function should correctly load these images and use them in the operation.
Acceptance Criteria
Run tests using both "Flat-fielding" and other operations to ensure the function reacts appropriately.
Specifically, test with missing files for "Flat-fielding" to see that the function handles errors as expected.
Integration Check: Confirm that changes do not disrupt the existing setup and integrate cleanly with the current test suite