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16sRNA Microbial Profiling R scripts to find most significant OTUs in 16RNA data after data normalization, followed by ordination and clustering and then plotting iTOL

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CB315D0M2_GTACTCTAGACT_L001_R1_001.fastq.qual.histo.pdf

CB315D0M2_GTACTCTAGACT_L001_R1_001.fastq.qual.histo.pdf

 
 

CB315D0M2_GTACTCTAGACT_L001_R2_001.fastq.qual.histo.pdf

CB315D0M2_GTACTCTAGACT_L001_R2_001.fastq.qual.histo.pdf

 
 

Cubi_LChesnel_EPAN12_0120_DAP_final_130429.xlsx

Cubi_LChesnel_EPAN12_0120_DAP_final_130429.xlsx

 
 

Microbial_Profiling_Report_Cubi_Chesnel_EPAN12_0120_2013-05-01.docx

Microbial_Profiling_Report_Cubi_Chesnel_EPAN12_0120_2013-05-01.docx

 
 

README.md

README.md

 
 

abund_rep_set.GG98_FL.taxonomy.80.csv

abund_rep_set.GG98_FL.taxonomy.80.csv

 
 

gg_97_otus_4feb2011.tre

gg_97_otus_4feb2011.tre

 
 

metadata.csv

metadata.csv

 
 

notes.txt

notes.txt

 
 

params_CB315Time.R

params_CB315Time.R

 
 

params_CB315vCUB2.R

params_CB315vCUB2.R

 
 

params_CB315vMET.R

params_CB315vMET.R

 
 

params_CB315vUNT.R

params_CB315vUNT.R

 
 

params_CB315vVAN.R

params_CB315vVAN.R

 
 

params_CUB2Time.R

params_CUB2Time.R

 
 

params_CUB2vUNT.R

params_CUB2vUNT.R

 
 

params_GENTvUNT.R

params_GENTvUNT.R

 
 

params_METTime.R

params_METTime.R

 
 

params_METvUNT.R

params_METvUNT.R

 
 

params_VANTime.R

params_VANTime.R

 
 

params_VANvUNT.R

params_VANvUNT.R

 
 

params_overview.R

params_overview.R

 
 

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Phycastats

16sRNA Microbial Profiling R scripts to find most significant OTUs in 16RNA data after data normalization, followed by ordination and clustering and then plotting iTOL 16sRNA Microbial Profiling R scripts to find most significant OTUs in 16RNA data after data normalization, followed by ordination and clustering and then plotting iTOL

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16sRNA Microbial Profiling R scripts to find most significant OTUs in 16RNA data after data normalization, followed by ordination and clustering and then plotting iTOL

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r pca data-normalization hcan itol 16srna

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