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Add command to create a collection of scores #15

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merged 1 commit into from
Dec 2, 2023

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@lukfor lukfor commented Dec 2, 2023

This PR adds a command that merges multiple score files into one single sorted tab file.

@lukfor lukfor merged commit 117d6e1 into features/apply-collections Dec 2, 2023
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@lukfor lukfor deleted the features/create-collection branch December 2, 2023 15:28
lukfor added a commit that referenced this pull request Dec 6, 2023
* Refactore apply task to use collection interface

* Support collection that contain mltiple scores

* Add command to create a collection of scores (#15)

* Fix issue with PGSIDs

* Refactor fileformat

* Add bgzip support to collections and info files

* Support tabix index for collections

* Register create-collection command

* Fix error in total variants calculation

* Add support of hm_inferOtherAllele column

* Improve collection and fix issue with duplicate positions

* Add score file option to create-collection command
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