Examples for SDAccel 2017.1+ on AWS F1 instances
Porting Smith-Waterman code to SDAccel 2017.1 on KU3 with 2 Memory Ports.
Current Performance: 42.3 GCUPS
Paper Here
@INPROCEEDINGS{7927082,
author={L. Di Tucci and K. O'Brien and M. Blott and M. D. Santambrogio},
booktitle={Design, Automation Test in Europe Conference Exhibition (DATE), 2017},
title={Architectural optimizations for high performance and energy efficient Smith-Waterman implementation on FPGAs using OpenCL},
year={2017},
pages={716-721},
keywords={Algorithm design and analysis;Computer architecture;Field programmable gate arrays;Graphics processing units;Hardware;Optimization;Performance evaluation},
doi={10.23919/DATE.2017.7927082},
month={March},}
Smith-Waterman deployed with GUI
Curent Problem: The gui does not offer a way to map ports
Simple vector addition deployed with the Makefile Flow
Same vector addition as above, deployed with GUI
Hardware Acceleration of a Protein Folding Algorithm. Winning Entry of the Xilinx Open Hardware 2016, more info [here] (http://www.openhw.eu/2016-finalists.html)
Official Repository here
Paper here
Citing us:
@INPROCEEDINGS{7740584,
author={G. Guidi and L. Di Tucci and M. D. Santambrogio},
booktitle={2016 IEEE 2nd International Forum on Research and Technologies for Society and Industry Leveraging a better tomorrow (RTSI)},
title={ProFAX: A hardware acceleration of a protein folding algorithm},
year={2016},
pages={1-6},
keywords={Monte Carlo methods;drugs;macromolecules;medical computing;molecular biophysics;proteins;Monte Carlo simulation;ProFAX;ab initio protein folding algorithm;amino acid sequence;drug industries;energetic features;geometrical features;hardware acceleration;pharmaceutical therapies;software implementation;tertiary structure;Acceleration;Algorithm design and analysis;Amino acids;Field programmable gate arrays;Hardware;Industries;Proteins},
doi={10.1109/RTSI.2016.7740584},
month={Sept},}
Custom Makefile, change the source files and options for Xocc to run it.
make [emulation | build | clean | clean_sw_emu | clean_hw_emu | clean_hw | cleanall] TARGET=<sw_emu | hw_emu | hw>
Contributions to this repo are more than welcome!
For any request shoot an email at lorenzo.ditucci@polimi.it