pdb_parse

Get rna from wwPDB file.

usage:

./workflow.py

workflow:
    summary.ipynb

from parse_pdb import pdbfile
pdb = pdbfile(path)
rna_info_list = pdb.rnainfo_list # get coordinates
missing_bases = pdb.missing_bases # get missing residues
missing_atoms = pdb.missing_atoms # get missing atoms
from function import build_rna_list
rna_list = build_rna_list(pdb) # get rna
for rna in rna_list:
    print(rna.sequence) # get sequence
    base = rna[index]
    print(base, base.coordinate_list()) # get base, atom coordinates([] for missing residues)