Skip to content

Nonparametric P-Value Estimation for Predictors in Lasso

License

Notifications You must be signed in to change notification settings

lingfeiwang/lassopv

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

8 Commits
 
 
 
 
 
 
 
 
 
 

Repository files navigation

This package estimates the p-values for predictors x against target variable y in lasso regression, using the regularization strength when each predictor enters the active set of regularization path for the first time as the statistic. This is based on the assumption that predictors (of the same variance) that (first) become active earlier tend to be more significant. Three null distributions are supported: normal and spherical, which are computed separately for each predictor and analytically under approximation, which aims at efficiency and accuracy for small p-values.

Reference:
Lingfei Wang and Tom Michoel, Controlling false discoveries in Bayesian gene networks with lasso regression p-values, https://arxiv.org/pdf/1701.07011. 2017, 2018.