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Update docs and labels for CXR-3 release #227

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Update docs and labels for CXR-3 release #227

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haydengunraj
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Pull Request Template

Description

Add cleaned CXR-3 label files, update README and COVIDx docs.

Context of change

Please add options that are relevant and mark any boxes that apply.

  • Software (software that runs on the PC)
  • Library (library that runs on the PC)
  • Tool (tool that assists coding development)
  • Documentation and/or labels

Type of change

Please mark any boxes that apply.

  • Bug fix (non-breaking change which fixes an issue)
  • New feature (non-breaking change which adds functionality)
  • Breaking change (fix or feature that would cause existing functionality to not work as expected)
  • This change requires a documentation update
  • Dataset release

How Has This Been Tested?

N/A

Checklist:

Please mark any boxes that have been completed.

  • I have performed a self-review of my own code.
  • I have commented my code, particularly in hard-to-understand areas.
  • I have made corresponding changes to the documentation.
  • My changes generate no new warnings.
  • Any dependent changes have been merged and published in downstream modules.

README.md Show resolved Hide resolved
docs/train_eval_inference.md Show resolved Hide resolved
@@ -75,7 +75,7 @@ def eval(
parser.add_argument('--metaname', default='model.meta', type=str, help='Name of ckpt meta file')
parser.add_argument('--ckptname', default='model', type=str, help='Name of model ckpts')
parser.add_argument('--n_classes', default=2, type=int, help='Number of detected classes, defaults to 2')
parser.add_argument('--testfile', default='labels/test_COVIDx9B.txt', type=str, help='Name of testfile')
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Same here. test_COVIDx9B does not give me any information on what version it is being used. It makes it also difficult to track previous versions.

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let's just focus on the new release and not cleaning up the old ones. For the new datasets COVIDx CXR 3A and 3B, do you think it would just be clearer if it was COVIDx CXR3-2class and CXR3-3class?

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Yeah it might be clearer that way, we can use that scheme going forward.

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3 participants