Skip to content

Issues: lh3/seqtk

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

49 Open 118 Closed
49 Open 118 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

CutN fails when sequence begins with Ns
#211 opened Apr 19, 2024 by hloucks
converting fasta to fastq
#209 opened Mar 22, 2024 by keecarter
2
DNS Resolution Warning with Singularity Container
#207 opened Feb 19, 2024 by ua-micro-cha
seqtk hpc input.fq ignores the quality and converts to .fa
#205 opened Jan 15, 2024 by aafshinfard
seqtk comp count CpG
#202 opened Jul 26, 2023 by linpei26
seqtk telo -m works partially with 8mer wasp telomere
#201 opened Jun 9, 2023 by jbh-cas
5
output file contains only one amino acid
#200 opened Jan 31, 2023 by Jiayi-Zheng
1
subseq empty output
#189 opened Apr 12, 2022 by SingleCellCRM-user
feature request: ability to pass through all reads by specifying sample '1.0'
#188 opened Feb 13, 2022 by eboyden
cutN penalty to identify all Ns?
#187 opened Jan 27, 2022 by nikostr
Fail to open input file/stream
#186 opened Dec 29, 2021 by XueWang2019
1
seqtk hrun bin size
#185 opened Dec 16, 2021 by kimin0402
1
error running seqtk with parallel
#177 opened Jul 2, 2021 by EduanWilkinson
1
Error: Unable to locate package seqtk
#176 opened Jul 1, 2021 by HanaBanan
1
Packaging
#175 opened Jun 14, 2021 by V-Z
Extract sequences in regions doesn't work?
#174 opened Jun 3, 2021 by deb0612
Hi
#172 opened May 6, 2021 by kaurravneet4123
2
Problems with seqtk rename on fastq files with long reads (like isoseq)
#171 opened May 3, 2021 by maol-corteva
1
Subseq extracting reads with query name list failed
#169 opened Mar 2, 2021 by yangyxt
1
Sample ignores reads zero length reads
#164 opened Dec 3, 2020 by nh13
problem installing/running
#163 opened Nov 17, 2020 by ctob2
1
Subseq exclude list
#157 opened Mar 3, 2020 by weedcentipede
1
Retrieve paired-end reads with their mates
#156 opened Mar 1, 2020 by iquasere
1
Extract Sequences in a Defined Order
#152 opened Dec 9, 2019 by perryguog
fastqc outofmemoryError from seqtk generated files
#149 opened Nov 2, 2019 by wbsimey
1
ProTip! Add no:assignee to see everything that’s not assigned.