GitHub - lcolladotor/cshl_rstats_genome_scale_2024: CSHL Statistical Analysis of Genome Scale Data 2024

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 14 Commits
.github		.github
Figures		Figures
images		images
.DS_Store		.DS_Store
.Rbuildignore		.Rbuildignore
.gitignore		.gitignore
01_SPEAQeasy.R		01_SPEAQeasy.R
01_SPEAQeasy.Rmd		01_SPEAQeasy.Rmd
02_smokingMouse_experiment.R		02_smokingMouse_experiment.R
02_smokingMouse_experiment.Rmd		02_smokingMouse_experiment.Rmd
03_SummarizedExperiment.R		03_SummarizedExperiment.R
03_SummarizedExperiment.Rmd		03_SummarizedExperiment.Rmd
04_smokingMouse_RSE.R		04_smokingMouse_RSE.R
04_smokingMouse_RSE.Rmd		04_smokingMouse_RSE.Rmd
05_iSEE_intro.R		05_iSEE_intro.R
05_iSEE_intro.Rmd		05_iSEE_intro.Rmd
06_smokingMouse_plotting_basics.R		06_smokingMouse_plotting_basics.R
06_smokingMouse_plotting_basics.Rmd		06_smokingMouse_plotting_basics.Rmd
07_biocthis_intro.R		07_biocthis_intro.R
07_biocthis_intro.Rmd		07_biocthis_intro.Rmd
08_recount3_intro.R		08_recount3_intro.R
08_recount3_intro.Rmd		08_recount3_intro.Rmd
09_ExploreModelMatrix.R		09_ExploreModelMatrix.R
09_ExploreModelMatrix.Rmd		09_ExploreModelMatrix.Rmd
10_limma_overview.R		10_limma_overview.R
10_limma_overview.Rmd		10_limma_overview.Rmd
11_DEG_exercise.R		11_DEG_exercise.R
11_DEG_exercise.Rmd		11_DEG_exercise.Rmd
12_model_building.R		12_model_building.R
12_model_building.Rmd		12_model_building.Rmd
13_expression_heatmaps.R		13_expression_heatmaps.R
13_expression_heatmaps.Rmd		13_expression_heatmaps.Rmd
14_variancePartition_ComplexHeatmap_exercise.R		14_variancePartition_ComplexHeatmap_exercise.R
14_variancePartition_ComplexHeatmap_exercise.Rmd		14_variancePartition_ComplexHeatmap_exercise.Rmd
15_misc.R		15_misc.R
15_misc.Rmd		15_misc.Rmd
16_spatialLIBD_lecture.R		16_spatialLIBD_lecture.R
16_spatialLIBD_lecture.Rmd		16_spatialLIBD_lecture.Rmd
17_spatialLIBD_intro.R		17_spatialLIBD_intro.R
17_spatialLIBD_intro.Rmd		17_spatialLIBD_intro.Rmd
18_spatialLIBD_exercise.R		18_spatialLIBD_exercise.R
18_spatialLIBD_exercise.Rmd		18_spatialLIBD_exercise.Rmd
19_final_r_sessioninfo.R		19_final_r_sessioninfo.R
19_final_r_sessioninfo.Rmd		19_final_r_sessioninfo.Rmd
20_DGE_analysis_overview.Rmd		20_DGE_analysis_overview.Rmd
22_DGE_with_limma_voom.Rmd		22_DGE_with_limma_voom.Rmd
DESCRIPTION		DESCRIPTION
NAMESPACE		NAMESPACE
cshl_rstats_genome_scale_2024.Rproj		cshl_rstats_genome_scale_2024.Rproj
icon_192.png		icon_192.png
icon_32.png		icon_32.png
index.R		index.R
index.Rmd		index.Rmd
map_and_ga.html		map_and_ga.html
style.css		style.css
tangle.R		tangle.R