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@lbcb-sci

Šikić lab

A computational group with a focus on the development of new algorithms and AI models for the analysis of DNA and RNA sequencing data and biomolecular strucures

Popular repositories

  1. raven raven Public

    De novo genome assembler for long uncorrected reads

    C++ 195 21

  2. racon racon Public

    Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads

    C++ 188 35

  3. herro herro Public

    HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).

    Rust 119 6

  4. graphmap2 graphmap2 Public

    Forked from isovic/graphmap

    GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html https://www.biorxiv.org/content/10.1101/7204…

    C++ 62 5

  5. ra ra Public

    Forked from rvaser/ra

    Assembler for raw de novo genome assembly of long uncorrected reads.

    Python 37 4

  6. RiNALMo RiNALMo Public

    RiboNucleic Acid (RNA) Language Model

    Python 34 5

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