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Nicer API for density-adaptive hit scoring

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@AvantiShri AvantiShri released this 29 Apr 17:46
· 68 commits to master since this release
v0.5.14.1
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Learn about vigilant mode.

described in more detail in #91

The API is demonstrated in the TAL-GATA notebook here: https://github.com/kundajelab/tfmodisco/blob/e9b6db741ddfe73d0d7b86db50fb213e0d399612/examples/simulated_TAL_GATA_deeplearning/TF_MoDISco_TAL_GATA.ipynb
And also on Alex's E2F6 data (profile task) here: https://nbviewer.jupyter.org/github/kundajelab/tfmodisco_bio_experiments/blob/master/alex_keytfs/tfmodisco_ac25874/E2F6_profile_v0.5.14.1_hitscoring.ipynb

This version also includes some Leiden-related fixes pertaining to vtraag/leidenalg#68 and vtraag/leidenalg#66

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