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koellelab

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  1. betabinomial_bottleneck betabinomial_bottleneck Public

    Code for estimating transmission bottleneck sizes using the betabinomial approach

    8 1

  2. withinhost_fitnessInference withinhost_fitnessInference Public

    Python 3

  3. segregating-sites segregating-sites Public

    Code for epidemiological inference using segregating site trajectories

    Python 3 1

  4. sarscov2_nb_reanalysis sarscov2_nb_reanalysis Public

    Reanalysis of the SARS CoV-2 bottleneck estimates presented in Popa & Genger et al. Science Translational Medicine 2020

    Shell 1

  5. BB_bottleneck BB_bottleneck Public

    Forked from weissmanlab/BB_bottleneck

    R 1

  6. IAV_human_challenge_study_code IAV_human_challenge_study_code Public

    Shell

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