Python3.X implementation of bgsa-ndpi method.
Adapted code from https://github.com/dridk/bgsa-ndpi.
To run script:
Notebook has more details on usage and code to process images and WSI.
Repository contains implementation of bgsa-ndpi with primitive User Interface and it's Binder-friendly.
Original implementation is an analyser of bgsa using 2 stains for LB / LT recognition
Method described in:
Costa, S., Schutz, S., Cornec, D. et al. B-cell and T-cell quantification in minor salivary glands in primary Sjögren’s syndrome: development and validation of a pixel-based digital procedure. Arthritis Res Ther 18, 21 (2016). https://doi.org/10.1186/s13075-016-0924-2
Test image
Brown mask
Red mask
