Merge pull request oturns#377 from knaaptime/lodesupdate

.ci/310.yml

@@ -37,3 +37,7 @@ dependencies:
   - contextily
   - scikit-plot
   - python-graphviz
+  - sphinx>=1.4.3
+  - sphinxcontrib-bibtex==1
+  - sphinx_bootstrap_theme
+  - numpydoc

.github/workflows/build_docs.yml

@@ -1,48 +1,46 @@
  name: Build Docs
+
  on:
    push:
-     branches:
-     - master
-     - main
+     # Sequence of patterns matched against refs/tags
+     tags:
+       - 'v*' # Push events to matching v*, i.e. v1.0, v20.15.10
+   workflow_dispatch:
+     inputs:
+       version:
+         description: Manual Doc Build
+         default: test
+         required: false
  jobs:
    docs:
-     name: CI (${{ matrix.os }}-${{ matrix.environment-file }})
+     name: build & push docs
      runs-on: ${{ matrix.os }}
-     continue-on-error: ${{ matrix.experimental }}
-     timeout-minutes: 20
+     timeout-minutes: 90
      strategy:
        matrix:
          os: ['ubuntu-latest']
-         environment-file: [.ci/39.yml]
+         environment-file: [.ci/310.yml]
          experimental: [false]
      defaults:
        run:
          shell: bash -l {0}
+
      steps:
-       - uses: actions/checkout@v2
-       - uses: actions/cache@v2
-         env:
-           CACHE_NUMBER: 0
+       - name: checkout repo
+         uses: actions/checkout@v3
+
+       - name: setup micromamba
+         uses: mamba-org/setup-micromamba@v1
          with:
-           path: ~/conda_pkgs_dir
-           key: ${{ matrix.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles(matrix.environment-file) }}
-       - uses: conda-incubator/setup-miniconda@v2
-         with:
-            miniconda-version: 'latest'
-            channels: conda-forge
-            channel-priority: true
-            auto-update-conda: true
-            auto-activate-base: false
-            environment-file: ${{ matrix.environment-file }}
-            activate-environment: test
-            use-only-tar-bz2: true
-       - run: conda info --all
-       - run: conda list
-       - run: conda config --show-sources
-       - run: conda config --show
-       - run: pip install -e . --no-deps --force-reinstall
-       - run: cd docs; make html
-       - name: Commit documentation changes
+           environment-file: ${{ matrix.environment-file }}
+           micromamba-version: 'latest'
+
+       - name: make docs
+         run: |
+           pip install -e . --no-deps --force-reinstall
+           cd docs; make html
+
+       - name: commit docs
          run: |
            git clone https://github.com/ammaraskar/sphinx-action-test.git --branch gh-pages --single-branch gh-pages
            cp -r docs/_build/html/* gh-pages/
@@ -51,12 +49,13 @@
            git config --local user.name "GitHub Action"
            git add .
            git commit -m "Update documentation" -a || true
-           # The above command will fail if no changes were present, so we ignore
-           # the return code.
-       - name: Push changes
+           # The above command will fail if no changes were present,
+           # so we ignore the return code.
+
+       - name: push to gh-pages
          uses: ad-m/github-push-action@master
          with:
             branch: gh-pages
             directory: gh-pages
             github_token: ${{ secrets.GITHUB_TOKEN }}
-            force: true
+            force: true

.github/workflows/unittests.yml

@@ -46,11 +46,20 @@ jobs:
 
       - name: Test geosnap
         run: |
-          pytest -v --color yes --cov=geosnap --cov-append --cov-report term-missing --cov-report xml .
-
+          coverage run -m  pytest -v --color yes --cov=geosnap --cov-append --cov-report term-missing --cov-report xml .
       - name: codecov
         uses: codecov/codecov-action@v3
         with:
           token: ${{ secrets.CODECOV_TOKEN }}
           file: ./coverage.xml
-          name: geosnap-codecov
+          name: geosnap-codecov
+
+      - name: Generate and publish the report
+        if: |
+          failure()
+          && steps.status.outcome == 'failure'
+          && github.event_name == 'schedule'
+          && github.repository_owner == 'oturns'
+        uses: xarray-contrib/issue-from-pytest-log@v1
+        with:
+          log-path: pytest-log.jsonl