Sequence analysis and primer design

Types of analyses described here:

Pathogen sequence analysis

• Bacterial / viral pangenome analysis
• Identify regions within conserved genes with least diversity
• Compare potential target conserved gene sequences to off-targets

Population structure analysis

• Detecting population groups if not already known
• Detecting group defining mutations
  • Identifying regions that best differentiate populations

Primer design from whole genome sequences

• Identify conserved sequences among target genomes
• Compare target sequences to off target genomes