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Bring repo up to date #2

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Bring repo up to date #2

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kmader
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@kmader kmader commented Aug 20, 2019

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adalca and others added 30 commits August 8, 2019 22:38
@adalca
adding conditional tempalte
9424869
@adalca
adding link to interactive tipix session
c975b94
@adalca
Update README.md
df4933d
@adalca
move to module
63c11f0
@adalca
moving files
542a397
@adalca
tiny bit of reorg
5879088
@adalca
mv register.py
c219e42
@adalca
separating layers from networks
cedecec
@adalca
adding atlas citation
b19767b
@adalca
Update README.md
29d1917
@adalca
adding deformable templates citation
e6aae4f
@adalca
Update README.md
1b2bc44
@katiemlewis
added SLCC loss for SparseVM
7455286
@adalca
layer cleanup
7a366ea
@adalca
small losses cleanup
7474382
@adalca
adding atlases to updates
53d26c4
@ahoopes
initial reorg and separation of tf/pytorch
f58e074
@ahoopes
fix get_backend()
461baaa
@adalca
cleanup of networks
f7a2dbf
@adalca
Merge branch 'redesign' of https://github.com/voxelmorph/voxelmorph i…
55504fc 
…nto redesign
@adalca
adding small Dice fix
464b37e
@adalca
small fix for Dice loss
75ef4a3
@adalca
Merge branch 'master' of https://github.com/voxelmorph/voxelmorph
aaee2ee
@voxelmorph
Update issue templates
fb0ec59
@ahoopes
move external packages to in-source
a279735
@ahoopes
unify generators
801523f
@ahoopes
update external packages
3baac2b
@ahoopes
cleanup external package imports for tf backend
1676789
@ahoopes
add missing layers
96056b4
@ahoopes
cleanup backend imports
288e9b7
ahoopes and others added 30 commits September 7, 2020 13:10
@ahoopes
bf: output flow prob params when use_probs is enabled
58e15e2
@ahoopes
bf: fix parser namespace typo
aa9fd80
@ahoopes
bf: use Transform model for registration script
4a6b40c
@ahoopes
expand instance-training capabilities
a315961
@ahoopes
rename semisupervised training scripts
0933e4d
@ahoopes
rename semisupervised surf to pointcloud
a53f224
@ahoopes
bf: adapt synthseg for neurite changes
6e64c85
@ahoopes
rename unsupervised seg scripts
9d3cc44
@ahoopes
bf: cache missing inshape and nb_feats
1c5d78e
@adalca
adding jacobian_determinant utility
a92c570
@ahoopes
bf: fix for tf1/2 Dice loss compat
1c384b4
@ahoopes
nf: add pytorch dice loss
7dd5432
@ahoopes
bf: make sure torch dice has no div by zero
5273132
@adalca
fixing tf 2.0 div no nan
f34f3b4
@adalca
merge fix
6d4d9f5
@ahoopes
use model name as layer name prefix for Unet and VxmDense
d3f2e09
@ahoopes
bf: fix rescale-computed warp shape for Transform network
8f3f519
@ahoopes
add checks for backend package
25be63c
@ahoopes
cleaup README a bit
4038d44
@adalca
adding tutorial
44190a9
@adalca
grouping notes
9fcefff
@adalca
Update README.md
9329b8f
@brf2
updated TemplateCreation so it doesn't require an atlas input
996bb92
@ahoopes
Revert "updated TemplateCreation so it doesn't require an atlas input"
a33780b
@ahoopes
add install instructions to README
a1ab17b
@voxelmorph
Merge pull request #221 from voxelmorph/dev
2ce0fc1 
Add install instructions to README
@voxelmorph
removing GPL
eed7b90
@voxelmorph
Create LICENSE
c7f90d6 
switching to Apache 2.0
@voxelmorph
Update README.md
6a95228
@yanlend
Update Apache license in setup.py (#295)
9bde7a2
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9 participants
@kmader @adalca @katiemlewis @ahoopes @voxelmorph @SteffenCzolbe @brf2 @mu40 @yanlend