phylopomp, an R package for POMP inference on genealogies

Publications

“Markov Genealogy Processes” (Theoretical Population Biology 143:77–91)

Related packages:

• pomp
• circumstance

Checklist for adding a new model

• create and edit src/<model>.cc
• edit src/init.c
• edit R/geneal.R
• create and edit R/<model>.R
• add examples to examples/<model.R>
• add tests to tests/