Supporting material for Bjørnstad, Viboud, Grenfell, King (2020) "Comparison of alternative models of human movement and the spread of disease"

Manifest

• supplement.html: Supplementary material
• supplement.Rmd: Rmarkdown file
• LICENSE: license for this repository
• Makefile: main Makefile
• BritishIsles.rds: outline map of the British isles
• clean_data.rda: measles and demographic data for England & Wales, 1944--1964
• coords.rds, distances.rds: geographic coordinates of all population centers and pairwise distances between them
• sigma-bar.rds, sigma-profile.rds, tsir-fits.rds, under-reporting.rds, data-matrix.rds, susc-reconst.rds, exclusions.rds: results of the fitting of the TSIR model
• gravity-mle.rds, gravity.rds: results for the gravity model
• rankmat.rds, stouffer-mle.rds, stouffer.rds: results for the Stouffer model
• rankmat1.rds, stouffer1-mle.rds, stouffer1.rds: results for the Stouffer model variant
• compdest-mle.rds, compdest.rds, compdest_delta.rds, compdest_tau1.rds, compdest_tau2.rds: results for the competing destinations model
• radmat.rds, radiation-mle.rds: results for the radiation model
• radmat1.rds, radiation1-mle.rds: results for the radiation model variant
• xrad1-mle.rds: results for the extended radiation model
• xia-mle.rds, xia.rds: results for the Xia (2002) model
• diffusion-mle.rds, diffusion.rds: results for the diffusion model
• meanfield-mle.rds, meanfield.rds: results for the mean-field model

Supporting Material document

Link to paper

Link to data source