Kelly lab
Popular repositories
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Metagenomic-Disease-Classification-With-Deep-Learning
Metagenomic-Disease-Classification-With-Deep-Learning PublicThis repository accompanies the paper "Multiclass Disease Classification from Microbial Whole-CommunityMetagenomes using Graph Convolutional Neural Networks."
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viral-protein-function-plm
viral-protein-function-plm PublicViral protein family functional prediction using protein language models
PureBasic 9
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microbial-landscapes
microbial-landscapes PublicCode and data for 'Inferring the quasipotential landscape of microbial ecosystems with topological data analysis'
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viral-protein-function-annotation-with-protein-language-model
viral-protein-function-annotation-with-protein-language-model PublicAccompanying jupyter notebooks and data for figure generation for published manuscript
Jupyter Notebook 2
Repositories
- SARS-CoV-2-surveillence Public
Scripts and files related to the surveillance of SARS-CoV-2 for three years in the Bronx
- viral-protein-function-plm Public
Viral protein family functional prediction using protein language models
- viral-protein-function-annotation-with-protein-language-model Public
Accompanying jupyter notebooks and data for figure generation for published manuscript
- oral-microbes-are-a-signature-of-disease-in-the-gut Public
Source code accompanying the paper "Oral Microbes are a Signature of Disease in the Gut"
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- longitudinal-prediction-of-covid-outcomes Public
This is the code accompanying the paper "Longitudinally Monitored Biomarkers Predict the Timing of COVID-19 Outcomes"
- genomic-surveillance-of-the-bronx Public
Source code repository for the paper "Genomic Surveillance of SARS-CoV-2 in the Bronx Enables Clinical and Epidemiological Inference"
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- Metagenomic-Disease-Classification-With-Deep-Learning Public
This repository accompanies the paper "Multiclass Disease Classification from Microbial Whole-CommunityMetagenomes using Graph Convolutional Neural Networks."
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