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js2264/README.md

Bioconductor packages

Doc 📘 Bioconductor 🧬 Bioc builds ⚙️ Github 📦 Github checks 🧾 Lifecycle 🍃
Doc tidyCoverage Bioc release:
Release
Bioc devel:
Devel		 tidyCoverage rworkflows
Doc plyinteractions Bioc release:
Release
Bioc devel:
Devel		 plyinteractions rworkflows
Doc OHCA Bioc release
Bioc devel		 OHCA rworkflows
Doc BiocBook Bioc release:
Release
Bioc devel:
Devel		 BiocBook rworkflows
Doc HiCExperiment Bioc release:
Release
Bioc devel:
Devel		 HiCExperiment rworkflows
Doc HiContacts Bioc release:
Release
Bioc devel:
Devel		 HiContacts rworkflows
Doc HiCool Bioc release:
Release
Bioc devel:
Devel		 HiCool rworkflows
Doc HiContactsData Bioc release:
Release
Bioc devel:
Devel		 HiContactsData R-CMD-check-bioc
Doc DNAZooData Bioc release:
Release
Bioc devel:
Devel		 DNAZooData rworkflows
Doc fourDNData Bioc release:
Release
Bioc devel:
Devel		 fourDNData rworkflows
Doc VplotR Bioc release:
Release
Bioc devel:
Devel		 VplotR rworkflows
Doc periodicDNA Bioc release:
Release
Bioc devel:
Devel		 periodicDNA -

Other resources

  • hicstuff: lightweight library/pipeline to generate and handle Hi-C data
  • metator: Metagenomic binning based on Hi-C data
  • tinyMapper: Versatile pipeline to process a variety of genome-wide assays
  • autobcl2fastq: Automatically fetch data from a remote sequencer directory, demultiplex fastq files, trim adaptors and run some preliminary QCs

Pinned

  1. OHCA OHCA Public

    Orchestrating Hi-C analysis with Bioconductor

    TeX 6 3

  2. HiCExperiment HiCExperiment Public

    Importing and manipulating Hi-C data in R

    R 6 1

  3. HiContacts HiContacts Public

    Analyzing Hi-C data in R with HiCExperiment objects

    R 6 1

  4. tinyMapper tinyMapper Public

    Versatile "quick'n'dirty" mapper for genome-wide assays (e.g. ChIP-seq, ATAC-seq, RNA-seq, ...)

    Shell 6 1

  5. BiocBook BiocBook Public

    R 1 1

  6. plyinteractions plyinteractions Public

    Forked from tidyomics/plyinteractions

    R