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  1. mse mse Public

    Microbial Simulation Environment - A toolbox for the simulation of genome-scale metabolic network reconstructions in the marine environment. A case study with the AMT-13 cruise transect is included

    MATLAB 2

  2. PanGEM PanGEM Public

    Pangenome-scale metabolic network reconstruction, analysis, and strain-model extraction

    MATLAB 6 2

  3. NutrientUptake NutrientUptake Public

    Accompanying code to Casey and Follows, 2020. A flexible and easy-to-use model of microbial acclimation to nutrient availability.

    MATLAB 2

  4. jrcasey.github.io jrcasey.github.io Public

    My website

    JavaScript