Popular repositories

1. bioPatternsg bioPatternsg Public

   This is an application that builts gene regulatory networks from a basic collection of biological objects, gathering and processing PubMed abstracts, using Internet available informational resource…

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2. bio_ner_tagger bio_ner_tagger Public

   An experiment to tag ner entities related with biological molecular species using spaCy, fine-tuning a spacy's pipeline, and building a knowledge base of regulatory events, in order to model a gene…

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3. Predictor Predictor Public

   A system to infer genetic structures for DNA sequences. The system use concepts (rules or models) derived from machine learning tecniques and supports those structures with possible biological regu…

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4. geneARFF geneARFF Public

   An application to generate .arff files describing splicing sites from curated DNA sequences.

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5. jEnsemblTest jEnsemblTest Public

   An API to test JEnsembl facilities to acces the Ensembl database resources.

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6. classDNA classDNA Public

   An application to define the coordinates of structural sites in DNA sequences, using models trained with the Weka toolkit.

   Java 2