Try again #63
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| name: CI | |
| on: [ push, pull_request ] | |
| defaults: | |
| run: | |
| shell: bash | |
| jobs: | |
| # The main R checks | |
| r-check: | |
| # Build and check on Linux and Windows | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ ubuntu-latest, windows-latest ] | |
| # The type of runner that this job runs on | |
| runs-on: ${{ matrix.os }} | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Check out the repository under $GITHUB_WORKSPACE | |
| - uses: actions/checkout@v3 | |
| # Install and set up R | |
| - uses: r-lib/actions/setup-r@v2 | |
| # The curl package (upon which covr depends) requires libcurl | |
| - name: Install upstream system dependencies | |
| if: runner.os == 'Linux' | |
| run: sudo apt-get install -y libcurl4-openssl-dev | |
| - name: Parse and install dependencies | |
| run: | | |
| deps <- read.dcf("DESCRIPTION", c("Depends","Imports","LinkingTo","Suggests","Enhances")) | |
| deps <- na.omit(unlist(strsplit(deps, "\\s*,\\s*", perl=TRUE))) | |
| deps <- setdiff(unique(sub("\\s*\\([^\\)]+\\)\\s*$", "", deps, perl=TRUE)), c("R", rownames(installed.packages()))) | |
| install.packages(deps) | |
| shell: Rscript {0} | |
| - name: Build package | |
| run: R CMD build . | |
| - name: Check package | |
| run: R CMD check --no-manual *tar.gz || { mv *.Rcheck Rcheck; false; } | |
| # Having checked the package, we install it for use with the clients | |
| - name: Install package | |
| run: R CMD INSTALL *tar.gz | |
| - name: Check client packages | |
| run: | | |
| R CMD build clients/nifti1c && R CMD check --no-manual nifti1c*.tar.gz || ( cat nifti1c.Rcheck/00install.out >>Rcheck; exit 1 ) | |
| R CMD build clients/nifti2cpp && R CMD check --no-manual nifti2cpp*.tar.gz || ( cat nifti2cpp.Rcheck/00install.out >>Rcheck; exit 1 ) | |
| # Upload the check directory as an artefact on failure | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: ${{ matrix.os }}-results | |
| path: Rcheck | |
| - name: Update test coverage | |
| run: Rscript -e 'covr::codecov()' | |
| # Checks for standalone usage (without R) | |
| standalone-check: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ ubuntu-latest ] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Compile standalone programs | |
| run: cd standalone && make -f nii_info.make | |
| - name: Test standalone programs | |
| run: | | |
| standalone/nii_info inst/extdata/example.nii.gz | |
| standalone/nii2_info inst/extdata/example.nii.gz |